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Cluster: HRGMv2_1500_CGC8

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1500_14 HRGMv2_1500_14_41 43097 43402 + 4.A.3.2.6
TC HRGMv2_1500_14 HRGMv2_1500_14_42 43417 44679 + 4.A.3.2.2
pfam HRGMv2_1500_14 HRGMv2_1500_14_43 44934 45293 - PTS_IIA
CAZyme HRGMv2_1500_14 HRGMv2_1500_14_44 45390 46766 - GH1
TF HRGMv2_1500_14 HRGMv2_1500_14_45 46818 48716 - HTH_11
pfam HRGMv2_1500_14 HRGMv2_1500_14_46 48947 49702 + YdjC
CAZyme HRGMv2_1500_14 HRGMv2_1500_14_47 49794 51038 + GH1
CAZyme HRGMv2_1500_14 HRGMv2_1500_14_48 51108 52535 + GH140
Gene ID: HRGMv2_1500_14_41
Type: TC
Location: 43097 - 43402 (+)
Gene ID: HRGMv2_1500_14_42
Type: TC
Location: 43417 - 44679 (+)
Gene ID: HRGMv2_1500_14_43
Type: pfam
Location: 44934 - 45293 (-)
Gene ID: HRGMv2_1500_14_44
Type: CAZyme
Location: 45390 - 46766 (-)
Gene ID: HRGMv2_1500_14_45
Type: TF
Location: 46818 - 48716 (-)
Gene ID: HRGMv2_1500_14_46
Type: pfam
Location: 48947 - 49702 (+)
Gene ID: HRGMv2_1500_14_47
Type: CAZyme
Location: 49794 - 51038 (+)
Gene ID: HRGMv2_1500_14_48
Type: CAZyme
Location: 51108 - 52535 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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