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Cluster: HRGMv2_1500_CGC6

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1500_11 HRGMv2_1500_11_4 3451 4215 + 9.B.18.1.2
CAZyme HRGMv2_1500_11 HRGMv2_1500_11_5 4219 5136 + GT2
pfam HRGMv2_1500_11 HRGMv2_1500_11_6 5180 6451 + UDPG_MGDP_dh | UDPG_MGDP_dh_C | UDPG_MGDP_dh_N
CAZyme HRGMv2_1500_11 HRGMv2_1500_11_7 6457 7749 + GT4
pfam HRGMv2_1500_11 HRGMv2_1500_11_8 7749 8696 + C5-epim_C
CAZyme HRGMv2_1500_11 HRGMv2_1500_11_9 8693 9796 + GT4
pfam HRGMv2_1500_11 HRGMv2_1500_11_10 9793 10881 + EpsG
pfam HRGMv2_1500_11 HRGMv2_1500_11_11 11025 11972 + ATPgrasp_TupA
TC HRGMv2_1500_11 HRGMv2_1500_11_12 12057 13523 + 2.A.66.2.23
Gene ID: HRGMv2_1500_11_4
Type: TC
Location: 3451 - 4215 (+)
Gene ID: HRGMv2_1500_11_5
Type: CAZyme
Location: 4219 - 5136 (+)
Gene ID: HRGMv2_1500_11_6
Type: pfam
Location: 5180 - 6451 (+)
Gene ID: HRGMv2_1500_11_7
Type: CAZyme
Location: 6457 - 7749 (+)
Gene ID: HRGMv2_1500_11_8
Type: pfam
Location: 7749 - 8696 (+)
Gene ID: HRGMv2_1500_11_9
Type: CAZyme
Location: 8693 - 9796 (+)
Gene ID: HRGMv2_1500_11_10
Type: pfam
Location: 9793 - 10881 (+)
Gene ID: HRGMv2_1500_11_11
Type: pfam
Location: 11025 - 11972 (+)
Gene ID: HRGMv2_1500_11_12
Type: TC
Location: 12057 - 13523 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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