Cluster: HRGMv2_1500_CGC4
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1500
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1500_5 | HRGMv2_1500_5_39 | 51310 | 53637 | - | 9.A.8.1.6 |
| TC | HRGMv2_1500_5 | HRGMv2_1500_5_40 | 53761 | 53982 | - | 9.A.8.1.6 |
| STP | HRGMv2_1500_5 | HRGMv2_1500_5_41 | 54022 | 54264 | - | FeoA |
| STP | HRGMv2_1500_5 | HRGMv2_1500_5_42 | 54498 | 54746 | - | PTS-HPr |
| TC | HRGMv2_1500_5 | HRGMv2_1500_5_43 | 55168 | 56631 | - | 2.A.3.7.4 |
| NULL(UNKNOWN) | HRGMv2_1500_5 | HRGMv2_1500_5_44 | 56784 | 57239 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_1500_5 | HRGMv2_1500_5_45 | 57243 | 60251 | - | GH2 |
Gene ID: HRGMv2_1500_5_39
Type: TC
Location: 51310 - 53637 (-)
Type: TC
Location: 51310 - 53637 (-)
Gene ID: HRGMv2_1500_5_40
Type: TC
Location: 53761 - 53982 (-)
Type: TC
Location: 53761 - 53982 (-)
Gene ID: HRGMv2_1500_5_41
Type: STP
Location: 54022 - 54264 (-)
Type: STP
Location: 54022 - 54264 (-)
Gene ID: HRGMv2_1500_5_42
Type: STP
Location: 54498 - 54746 (-)
Type: STP
Location: 54498 - 54746 (-)
Gene ID: HRGMv2_1500_5_43
Type: TC
Location: 55168 - 56631 (-)
Type: TC
Location: 55168 - 56631 (-)
Gene ID: HRGMv2_1500_5_44
Type:
Location: 56784 - 57239 (-)
Type:
Location: 56784 - 57239 (-)
Gene ID: HRGMv2_1500_5_45
Type: CAZyme
Location: 57243 - 60251 (-)
Type: CAZyme
Location: 57243 - 60251 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.