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Cluster: HRGMv2_1500_CGC2

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1500_3 HRGMv2_1500_3_26 29081 31423 - 3.A.3.5.15
STP HRGMv2_1500_3 HRGMv2_1500_3_27 31995 34079 - Pkinase
STP HRGMv2_1500_3 HRGMv2_1500_3_28 34251 35213 - FHA
TC HRGMv2_1500_3 HRGMv2_1500_3_29 35720 37969 + 1.I.1.1.3
STP HRGMv2_1500_3 HRGMv2_1500_3_30 38589 39350 + Fer4
TC HRGMv2_1500_3 HRGMv2_1500_3_31 39774 40286 + 4.A.1.2.5
pfam HRGMv2_1500_3 HRGMv2_1500_3_32 40293 41159 + PRD | PRD | CAT_RBD
TC HRGMv2_1500_3 HRGMv2_1500_3_33 41259 42875 + 4.A.1.1.3
CAZyme HRGMv2_1500_3 HRGMv2_1500_3_34 42879 44261 + GH4
Gene ID: HRGMv2_1500_3_26
Type: TC
Location: 29081 - 31423 (-)
Gene ID: HRGMv2_1500_3_27
Type: STP
Location: 31995 - 34079 (-)
Gene ID: HRGMv2_1500_3_28
Type: STP
Location: 34251 - 35213 (-)
Gene ID: HRGMv2_1500_3_29
Type: TC
Location: 35720 - 37969 (+)
Gene ID: HRGMv2_1500_3_30
Type: STP
Location: 38589 - 39350 (+)
Gene ID: HRGMv2_1500_3_31
Type: TC
Location: 39774 - 40286 (+)
Gene ID: HRGMv2_1500_3_32
Type: pfam
Location: 40293 - 41159 (+)
Gene ID: HRGMv2_1500_3_33
Type: TC
Location: 41259 - 42875 (+)
Gene ID: HRGMv2_1500_3_34
Type: CAZyme
Location: 42879 - 44261 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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