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Cluster: HRGMv2_1500_CGC18

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1500_37 HRGMv2_1500_37_9 8939 10783 - GH2
TC HRGMv2_1500_37 HRGMv2_1500_37_10 10889 12313 - 4.A.1.2.2
TF HRGMv2_1500_37 HRGMv2_1500_37_11 12681 13694 + HTH_AraC
pfam HRGMv2_1500_37 HRGMv2_1500_37_12 13991 14551 - UDG
CAZyme HRGMv2_1500_37 HRGMv2_1500_37_13 14555 15931 - GH13_20
TC HRGMv2_1500_37 HRGMv2_1500_37_14 16114 17310 - 2.A.1.2.18
TC HRGMv2_1500_37 HRGMv2_1500_37_15 17432 19792 - 9.A.8.1.6
NULL(UNKNOWN) HRGMv2_1500_37 HRGMv2_1500_37_16 19914 20234 - NULL(UNKNOWN)
[View Structural Homologs]
peptidase HRGMv2_1500_37 HRGMv2_1500_37_17 20282 21181 - S09.UPW
TC HRGMv2_1500_37 HRGMv2_1500_37_18 21426 21989 + 4.A.1.2.6
Gene ID: HRGMv2_1500_37_9
Type: CAZyme
Location: 8939 - 10783 (-)
Gene ID: HRGMv2_1500_37_10
Type: TC
Location: 10889 - 12313 (-)
Gene ID: HRGMv2_1500_37_11
Type: TF
Location: 12681 - 13694 (+)
Gene ID: HRGMv2_1500_37_12
Type: pfam
Location: 13991 - 14551 (-)
Gene ID: HRGMv2_1500_37_13
Type: CAZyme
Location: 14555 - 15931 (-)
Gene ID: HRGMv2_1500_37_14
Type: TC
Location: 16114 - 17310 (-)
Gene ID: HRGMv2_1500_37_15
Type: TC
Location: 17432 - 19792 (-)
Gene ID: HRGMv2_1500_37_16
Type:
Location: 19914 - 20234 (-)
Gene ID: HRGMv2_1500_37_17
Type: peptidase
Location: 20282 - 21181 (-)
Gene ID: HRGMv2_1500_37_18
Type: TC
Location: 21426 - 21989 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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