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Cluster: HRGMv2_1500_CGC17

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1500_34 HRGMv2_1500_34_12 9608 10996 + GH1
TF HRGMv2_1500_34 HRGMv2_1500_34_13 11017 11838 - HTH_6
pfam HRGMv2_1500_34 HRGMv2_1500_34_14 12126 12893 + YdjC
TC HRGMv2_1500_34 HRGMv2_1500_34_15 13048 14340 + 4.A.3.2.2
TC HRGMv2_1500_34 HRGMv2_1500_34_16 14389 14685 + 4.A.3.2.6
TC HRGMv2_1500_34 HRGMv2_1500_34_17 14688 15029 + 4.A.3.2.1
CAZyme HRGMv2_1500_34 HRGMv2_1500_34_18 15115 16602 + GH1
pfam HRGMv2_1500_34 HRGMv2_1500_34_19 16627 17535 + ROK
CAZyme HRGMv2_1500_34 HRGMv2_1500_34_20 17950 19380 + GH1
Gene ID: HRGMv2_1500_34_12
Type: CAZyme
Location: 9608 - 10996 (+)
Gene ID: HRGMv2_1500_34_13
Type: TF
Location: 11017 - 11838 (-)
Gene ID: HRGMv2_1500_34_14
Type: pfam
Location: 12126 - 12893 (+)
Gene ID: HRGMv2_1500_34_15
Type: TC
Location: 13048 - 14340 (+)
Gene ID: HRGMv2_1500_34_16
Type: TC
Location: 14389 - 14685 (+)
Gene ID: HRGMv2_1500_34_17
Type: TC
Location: 14688 - 15029 (+)
Gene ID: HRGMv2_1500_34_18
Type: CAZyme
Location: 15115 - 16602 (+)
Gene ID: HRGMv2_1500_34_19
Type: pfam
Location: 16627 - 17535 (+)
Gene ID: HRGMv2_1500_34_20
Type: CAZyme
Location: 17950 - 19380 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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