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Cluster: HRGMv2_1500_CGC11

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1500_20 HRGMv2_1500_20_8 7821 9515 + 4.A.3.1.1
CAZyme HRGMv2_1500_20 HRGMv2_1500_20_9 10421 11842 - GH1
TC HRGMv2_1500_20 HRGMv2_1500_20_10 11918 13696 - 4.A.3.1.1
TF HRGMv2_1500_20 HRGMv2_1500_20_11 13972 14982 + LacI
pfam HRGMv2_1500_20 HRGMv2_1500_20_12 15338 16456 - Transposase_mut
TC HRGMv2_1500_20 HRGMv2_1500_20_13 16678 18438 - 4.A.3.1.1
CAZyme HRGMv2_1500_20 HRGMv2_1500_20_14 18615 20057 - GH1
TF HRGMv2_1500_20 HRGMv2_1500_20_15 20399 21436 + LacI
CAZyme HRGMv2_1500_20 HRGMv2_1500_20_16 21698 23137 - GH1
TC HRGMv2_1500_20 HRGMv2_1500_20_17 23203 24975 - 4.A.3.1.1
TF HRGMv2_1500_20 HRGMv2_1500_20_18 25332 26336 + LacI
TC HRGMv2_1500_20 HRGMv2_1500_20_19 26551 26889 + 4.A.3.1.2
Gene ID: HRGMv2_1500_20_8
Type: TC
Location: 7821 - 9515 (+)
Gene ID: HRGMv2_1500_20_9
Type: CAZyme
Location: 10421 - 11842 (-)
Gene ID: HRGMv2_1500_20_10
Type: TC
Location: 11918 - 13696 (-)
Gene ID: HRGMv2_1500_20_11
Type: TF
Location: 13972 - 14982 (+)
Gene ID: HRGMv2_1500_20_12
Type: pfam
Location: 15338 - 16456 (-)
Gene ID: HRGMv2_1500_20_13
Type: TC
Location: 16678 - 18438 (-)
Gene ID: HRGMv2_1500_20_14
Type: CAZyme
Location: 18615 - 20057 (-)
Gene ID: HRGMv2_1500_20_15
Type: TF
Location: 20399 - 21436 (+)
Gene ID: HRGMv2_1500_20_16
Type: CAZyme
Location: 21698 - 23137 (-)
Gene ID: HRGMv2_1500_20_17
Type: TC
Location: 23203 - 24975 (-)
Gene ID: HRGMv2_1500_20_18
Type: TF
Location: 25332 - 26336 (+)
Gene ID: HRGMv2_1500_20_19
Type: TC
Location: 26551 - 26889 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1500_20_15 vegetarian > omnivore 1.04901 0.02677

🧭 Explore Read Mapping of CGC

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