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Cluster: HRGMv2_1499_CGC2

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1499_5 HRGMv2_1499_5_31 31915 33084 - CE9
STP HRGMv2_1499_5 HRGMv2_1499_5_32 33203 34369 - SIS | SIS
TF HRGMv2_1499_5 HRGMv2_1499_5_33 34484 35215 - GntR
TC HRGMv2_1499_5 HRGMv2_1499_5_34 35400 36482 - 4.A.6.1.4
TC HRGMv2_1499_5 HRGMv2_1499_5_35 36472 37272 - 4.A.6.1.4
TC HRGMv2_1499_5 HRGMv2_1499_5_36 37363 37845 - 4.A.6.1.4
pfam HRGMv2_1499_5 HRGMv2_1499_5_37 37882 38163 - YajC
TC HRGMv2_1499_5 HRGMv2_1499_5_38 38163 38606 - 4.A.6.1.16
Gene ID: HRGMv2_1499_5_31
Type: CAZyme
Location: 31915 - 33084 (-)
Gene ID: HRGMv2_1499_5_32
Type: STP
Location: 33203 - 34369 (-)
Gene ID: HRGMv2_1499_5_33
Type: TF
Location: 34484 - 35215 (-)
Gene ID: HRGMv2_1499_5_34
Type: TC
Location: 35400 - 36482 (-)
Gene ID: HRGMv2_1499_5_35
Type: TC
Location: 36472 - 37272 (-)
Gene ID: HRGMv2_1499_5_36
Type: TC
Location: 37363 - 37845 (-)
Gene ID: HRGMv2_1499_5_37
Type: pfam
Location: 37882 - 38163 (-)
Gene ID: HRGMv2_1499_5_38
Type: TC
Location: 38163 - 38606 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1499_5_37 vegan > omnivore 1.00555 0.00566

🧭 Explore Read Mapping of CGC

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