Cluster: HRGMv2_1499_CGC1
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_1499
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1499_5 | HRGMv2_1499_5_13 | 12905 | 13243 | - | 4.A.3.1.2 |
| TF | HRGMv2_1499_5 | HRGMv2_1499_5_14 | 13458 | 14462 | - | LacI |
| TC | HRGMv2_1499_5 | HRGMv2_1499_5_15 | 14818 | 16593 | + | 4.A.3.1.1 |
| CAZyme | HRGMv2_1499_5 | HRGMv2_1499_5_16 | 16660 | 18099 | + | GH1 |
| TF | HRGMv2_1499_5 | HRGMv2_1499_5_17 | 18511 | 19521 | - | LacI |
| TC | HRGMv2_1499_5 | HRGMv2_1499_5_18 | 19797 | 21554 | + | 4.A.3.1.1 |
| CAZyme | HRGMv2_1499_5 | HRGMv2_1499_5_19 | 21630 | 23051 | + | GH1 |
Gene ID: HRGMv2_1499_5_13
Type: TC
Location: 12905 - 13243 (-)
Type: TC
Location: 12905 - 13243 (-)
Gene ID: HRGMv2_1499_5_14
Type: TF
Location: 13458 - 14462 (-)
Type: TF
Location: 13458 - 14462 (-)
Gene ID: HRGMv2_1499_5_15
Type: TC
Location: 14818 - 16593 (+)
Type: TC
Location: 14818 - 16593 (+)
Gene ID: HRGMv2_1499_5_16
Type: CAZyme
Location: 16660 - 18099 (+)
Type: CAZyme
Location: 16660 - 18099 (+)
Gene ID: HRGMv2_1499_5_17
Type: TF
Location: 18511 - 19521 (-)
Type: TF
Location: 18511 - 19521 (-)
Gene ID: HRGMv2_1499_5_18
Type: TC
Location: 19797 - 21554 (+)
Type: TC
Location: 19797 - 21554 (+)
Gene ID: HRGMv2_1499_5_19
Type: CAZyme
Location: 21630 - 23051 (+)
Type: CAZyme
Location: 21630 - 23051 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.