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Cluster: HRGMv2_1496_CGC8

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1496_4 HRGMv2_1496_4_70 81916 82359 + 4.A.6.1.16
pfam HRGMv2_1496_4 HRGMv2_1496_4_71 82359 82640 + YajC
TC HRGMv2_1496_4 HRGMv2_1496_4_72 82677 83159 + 4.A.6.1.4
TC HRGMv2_1496_4 HRGMv2_1496_4_73 83250 84050 + 4.A.6.1.4
TC HRGMv2_1496_4 HRGMv2_1496_4_74 84040 85122 + 4.A.6.1.4
TF HRGMv2_1496_4 HRGMv2_1496_4_75 85307 86038 + GntR
STP HRGMv2_1496_4 HRGMv2_1496_4_76 86153 87319 + SIS | SIS
CAZyme HRGMv2_1496_4 HRGMv2_1496_4_77 87437 88606 + CE9
Gene ID: HRGMv2_1496_4_70
Type: TC
Location: 81916 - 82359 (+)
Gene ID: HRGMv2_1496_4_71
Type: pfam
Location: 82359 - 82640 (+)
Gene ID: HRGMv2_1496_4_72
Type: TC
Location: 82677 - 83159 (+)
Gene ID: HRGMv2_1496_4_73
Type: TC
Location: 83250 - 84050 (+)
Gene ID: HRGMv2_1496_4_74
Type: TC
Location: 84040 - 85122 (+)
Gene ID: HRGMv2_1496_4_75
Type: TF
Location: 85307 - 86038 (+)
Gene ID: HRGMv2_1496_4_76
Type: STP
Location: 86153 - 87319 (+)
Gene ID: HRGMv2_1496_4_77
Type: CAZyme
Location: 87437 - 88606 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1496_4_71 vegan > omnivore 1.15639 0.00566

🧭 Explore Read Mapping of CGC

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