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Cluster: HRGMv2_1496_CGC19

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1496_28 HRGMv2_1496_28_1 64 858 - 3.A.1.34.1
TC HRGMv2_1496_28 HRGMv2_1496_28_2 851 1774 - 3.A.1.34.1
TC HRGMv2_1496_28 HRGMv2_1496_28_3 1979 2959 - 3.A.1.34.1
NULL(UNKNOWN) HRGMv2_1496_28 HRGMv2_1496_28_4 3120 3905 - NULL(UNKNOWN)
[View Structural Homologs]
pfam HRGMv2_1496_28 HRGMv2_1496_28_5 4155 5558 - tRNA-synt_2 | tRNA_anti-codon
TC HRGMv2_1496_28 HRGMv2_1496_28_6 5741 6304 - 4.A.1.2.6
peptidase HRGMv2_1496_28 HRGMv2_1496_28_7 6549 7451 + S09.UPW
TC HRGMv2_1496_28 HRGMv2_1496_28_8 7832 10189 + 9.A.8.1.6
pfam HRGMv2_1496_28 HRGMv2_1496_28_9 10285 10767 + tRNA_edit
TC HRGMv2_1496_28 HRGMv2_1496_28_10 10871 12067 + 2.A.1.2.18
CAZyme HRGMv2_1496_28 HRGMv2_1496_28_11 12221 13597 + GH13_20
Gene ID: HRGMv2_1496_28_1
Type: TC
Location: 64 - 858 (-)
Gene ID: HRGMv2_1496_28_2
Type: TC
Location: 851 - 1774 (-)
Gene ID: HRGMv2_1496_28_3
Type: TC
Location: 1979 - 2959 (-)
Gene ID: HRGMv2_1496_28_4
Type:
Location: 3120 - 3905 (-)
Gene ID: HRGMv2_1496_28_5
Type: pfam
Location: 4155 - 5558 (-)
Gene ID: HRGMv2_1496_28_6
Type: TC
Location: 5741 - 6304 (-)
Gene ID: HRGMv2_1496_28_7
Type: peptidase
Location: 6549 - 7451 (+)
Gene ID: HRGMv2_1496_28_8
Type: TC
Location: 7832 - 10189 (+)
Gene ID: HRGMv2_1496_28_9
Type: pfam
Location: 10285 - 10767 (+)
Gene ID: HRGMv2_1496_28_10
Type: TC
Location: 10871 - 12067 (+)
Gene ID: HRGMv2_1496_28_11
Type: CAZyme
Location: 12221 - 13597 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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