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Cluster: HRGMv2_1496_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1496_1 HRGMv2_1496_1_19 24253 25272 - GT2
pfam HRGMv2_1496_1 HRGMv2_1496_1_20 25443 26573 - Acyl_transf_3
CAZyme HRGMv2_1496_1 HRGMv2_1496_1_21 26685 27788 + GT2
CAZyme HRGMv2_1496_1 HRGMv2_1496_1_22 27796 28824 + GT2
NULL(UNKNOWN) HRGMv2_1496_1 HRGMv2_1496_1_23 28847 29737 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_1496_1 HRGMv2_1496_1_24 30017 31606 + GH25
pfam HRGMv2_1496_1 HRGMv2_1496_1_25 31705 33849 + Choline_bind_1 | Choline_bind_1 | Choline_bind_1 | Choline_bind_1 | Choline_bind_1 | Choline_bind_1 | Choline_bind_1 | Choline_bind_1 | Peptidase_C39_2 | Choline_bind_3 | Choline_bind_3 | Choline_bind_3 | Choline_bind_3
TC HRGMv2_1496_1 HRGMv2_1496_1_26 33914 34855 - 2.A.7.18.1
Gene ID: HRGMv2_1496_1_19
Type: CAZyme
Location: 24253 - 25272 (-)
Gene ID: HRGMv2_1496_1_20
Type: pfam
Location: 25443 - 26573 (-)
Gene ID: HRGMv2_1496_1_21
Type: CAZyme
Location: 26685 - 27788 (+)
Gene ID: HRGMv2_1496_1_22
Type: CAZyme
Location: 27796 - 28824 (+)
Gene ID: HRGMv2_1496_1_23
Type:
Location: 28847 - 29737 (-)
Gene ID: HRGMv2_1496_1_24
Type: CAZyme
Location: 30017 - 31606 (+)
Gene ID: HRGMv2_1496_1_25
Type: pfam
Location: 31705 - 33849 (+)
Gene ID: HRGMv2_1496_1_26
Type: TC
Location: 33914 - 34855 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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