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Cluster: HRGMv2_1495_CGC11

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1495_29 HRGMv2_1495_29_10 10390 10728 - 4.A.3.1.2
TF HRGMv2_1495_29 HRGMv2_1495_29_11 10943 11947 - LacI
TC HRGMv2_1495_29 HRGMv2_1495_29_12 12304 14079 + 4.A.3.1.1
CAZyme HRGMv2_1495_29 HRGMv2_1495_29_13 14146 15585 + GH1
TF HRGMv2_1495_29 HRGMv2_1495_29_14 16025 17026 - LacI
TC HRGMv2_1495_29 HRGMv2_1495_29_15 17311 19068 + 4.A.3.1.1
CAZyme HRGMv2_1495_29 HRGMv2_1495_29_16 19144 20565 + GH1
TF HRGMv2_1495_29 HRGMv2_1495_29_17 21253 22017 - HTH_DeoR
sulfatase HRGMv2_1495_29 HRGMv2_1495_29_18 22222 23274 + S1_4
TC HRGMv2_1495_29 HRGMv2_1495_29_19 23601 24083 - 4.A.6.1.5
pfam HRGMv2_1495_29 HRGMv2_1495_29_20 24525 24998 - DUF386
CAZyme HRGMv2_1495_29 HRGMv2_1495_29_21 25031 26200 - CE9
TF HRGMv2_1495_29 HRGMv2_1495_29_22 26344 27075 - GntR
TC HRGMv2_1495_29 HRGMv2_1495_29_23 27308 28795 - 4.A.1.1.7
Gene ID: HRGMv2_1495_29_10
Type: TC
Location: 10390 - 10728 (-)
Gene ID: HRGMv2_1495_29_11
Type: TF
Location: 10943 - 11947 (-)
Gene ID: HRGMv2_1495_29_12
Type: TC
Location: 12304 - 14079 (+)
Gene ID: HRGMv2_1495_29_13
Type: CAZyme
Location: 14146 - 15585 (+)
Gene ID: HRGMv2_1495_29_14
Type: TF
Location: 16025 - 17026 (-)
Gene ID: HRGMv2_1495_29_15
Type: TC
Location: 17311 - 19068 (+)
Gene ID: HRGMv2_1495_29_16
Type: CAZyme
Location: 19144 - 20565 (+)
Gene ID: HRGMv2_1495_29_17
Type: TF
Location: 21253 - 22017 (-)
Gene ID: HRGMv2_1495_29_18
Type: sulfatase
Location: 22222 - 23274 (+)
Gene ID: HRGMv2_1495_29_19
Type: TC
Location: 23601 - 24083 (-)
Gene ID: HRGMv2_1495_29_20
Type: pfam
Location: 24525 - 24998 (-)
Gene ID: HRGMv2_1495_29_21
Type: CAZyme
Location: 25031 - 26200 (-)
Gene ID: HRGMv2_1495_29_22
Type: TF
Location: 26344 - 27075 (-)
Gene ID: HRGMv2_1495_29_23
Type: TC
Location: 27308 - 28795 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1495_29_22 vegetarian > vegan 3.42766 0.02517

🧭 Explore Read Mapping of CGC

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