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Cluster: HRGMv2_1495_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1495_2 HRGMv2_1495_2_66 84468 85844 - 3.A.1.10.5
pfam HRGMv2_1495_2 HRGMv2_1495_2_67 85848 86906 - NMT1
TC HRGMv2_1495_2 HRGMv2_1495_2_68 86909 88720 - 3.D.1.5.1
STP HRGMv2_1495_2 HRGMv2_1495_2_69 88714 90546 - Pyr_redox_2
CAZyme HRGMv2_1495_2 HRGMv2_1495_2_70 90804 92186 - GH4
TC HRGMv2_1495_2 HRGMv2_1495_2_71 92190 93806 - 4.A.1.1.3
pfam HRGMv2_1495_2 HRGMv2_1495_2_72 93906 94772 - PRD | PRD | CAT_RBD
TC HRGMv2_1495_2 HRGMv2_1495_2_73 94779 95291 - 4.A.1.2.5
STP HRGMv2_1495_2 HRGMv2_1495_2_74 95572 96333 - Fer4
TC HRGMv2_1495_2 HRGMv2_1495_2_75 96955 99213 - 1.I.1.1.3
STP HRGMv2_1495_2 HRGMv2_1495_2_76 99810 100772 + FHA
STP HRGMv2_1495_2 HRGMv2_1495_2_77 100944 103028 + Pkinase
TC HRGMv2_1495_2 HRGMv2_1495_2_78 103363 105705 + 3.A.3.5.15
Gene ID: HRGMv2_1495_2_66
Type: TC
Location: 84468 - 85844 (-)
Gene ID: HRGMv2_1495_2_67
Type: pfam
Location: 85848 - 86906 (-)
Gene ID: HRGMv2_1495_2_68
Type: TC
Location: 86909 - 88720 (-)
Gene ID: HRGMv2_1495_2_69
Type: STP
Location: 88714 - 90546 (-)
Gene ID: HRGMv2_1495_2_70
Type: CAZyme
Location: 90804 - 92186 (-)
Gene ID: HRGMv2_1495_2_71
Type: TC
Location: 92190 - 93806 (-)
Gene ID: HRGMv2_1495_2_72
Type: pfam
Location: 93906 - 94772 (-)
Gene ID: HRGMv2_1495_2_73
Type: TC
Location: 94779 - 95291 (-)
Gene ID: HRGMv2_1495_2_74
Type: STP
Location: 95572 - 96333 (-)
Gene ID: HRGMv2_1495_2_75
Type: TC
Location: 96955 - 99213 (-)
Gene ID: HRGMv2_1495_2_76
Type: STP
Location: 99810 - 100772 (+)
Gene ID: HRGMv2_1495_2_77
Type: STP
Location: 100944 - 103028 (+)
Gene ID: HRGMv2_1495_2_78
Type: TC
Location: 103363 - 105705 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1495_2_67 vegan > omnivore 1.02154 0.02934

🧭 Explore Read Mapping of CGC

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