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Cluster: HRGMv2_1494_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1494_4 HRGMv2_1494_4_17 16559 17443 - CE7
TC HRGMv2_1494_4 HRGMv2_1494_4_18 17617 18444 - 3.A.1.5.27
TC HRGMv2_1494_4 HRGMv2_1494_4_19 18445 20460 - 3.A.1.5.25
TC HRGMv2_1494_4 HRGMv2_1494_4_20 20464 21420 - 3.A.1.5.38
TC HRGMv2_1494_4 HRGMv2_1494_4_21 21578 23191 - 3.A.1.5.27
pfam HRGMv2_1494_4 HRGMv2_1494_4_22 23557 25497 - GIY-YIG | UVR | UvrC_RNaseH_dom | HHH_2 | HHH_5 | UvrC_RNaseH
TC HRGMv2_1494_4 HRGMv2_1494_4_23 25504 27186 - 2.A.66.4.4
Gene ID: HRGMv2_1494_4_17
Type: CAZyme
Location: 16559 - 17443 (-)
Gene ID: HRGMv2_1494_4_18
Type: TC
Location: 17617 - 18444 (-)
Gene ID: HRGMv2_1494_4_19
Type: TC
Location: 18445 - 20460 (-)
Gene ID: HRGMv2_1494_4_20
Type: TC
Location: 20464 - 21420 (-)
Gene ID: HRGMv2_1494_4_21
Type: TC
Location: 21578 - 23191 (-)
Gene ID: HRGMv2_1494_4_22
Type: pfam
Location: 23557 - 25497 (-)
Gene ID: HRGMv2_1494_4_23
Type: TC
Location: 25504 - 27186 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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