Cluster: HRGMv2_1493_CGC4
🧬 Cluster Details
- Gene Count: 16
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1493
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1493_6 | HRGMv2_1493_6_29 | 30772 | 31479 | + | 1.C.82.1.1 |
| pfam | HRGMv2_1493_6 | HRGMv2_1493_6_30 | 31607 | 32317 | - | Metallophos | Metallophos_2 |
| pfam | HRGMv2_1493_6 | HRGMv2_1493_6_31 | 32314 | 34230 | - | Bmp |
| TC | HRGMv2_1493_6 | HRGMv2_1493_6_32 | 34324 | 35091 | - | 1.A.23.4.10 |
| pfam | HRGMv2_1493_6 | HRGMv2_1493_6_33 | 35220 | 37250 | - | Metallophos | 5_nucleotid_C |
| TC | HRGMv2_1493_6 | HRGMv2_1493_6_34 | 37323 | 38117 | - | 3.A.1.34.1 |
| TC | HRGMv2_1493_6 | HRGMv2_1493_6_35 | 38110 | 39033 | - | 3.A.1.34.1 |
| TC | HRGMv2_1493_6 | HRGMv2_1493_6_36 | 39238 | 40218 | - | 3.A.1.34.1 |
| NULL(UNKNOWN) | HRGMv2_1493_6 | HRGMv2_1493_6_37 | 40379 | 41164 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | HRGMv2_1493_6 | HRGMv2_1493_6_38 | 41414 | 42817 | - | tRNA-synt_2 | tRNA_anti-codon |
| TC | HRGMv2_1493_6 | HRGMv2_1493_6_39 | 42999 | 43562 | - | 4.A.1.2.6 |
| peptidase | HRGMv2_1493_6 | HRGMv2_1493_6_40 | 43807 | 44706 | + | S09.UPW |
| NULL(UNKNOWN) | HRGMv2_1493_6 | HRGMv2_1493_6_41 | 44754 | 45074 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_1493_6 | HRGMv2_1493_6_42 | 45196 | 47556 | + | 9.A.8.1.6 |
| TC | HRGMv2_1493_6 | HRGMv2_1493_6_43 | 47680 | 48876 | + | 2.A.1.2.18 |
| CAZyme | HRGMv2_1493_6 | HRGMv2_1493_6_44 | 49031 | 50407 | + | GH13_20 |
Gene ID: HRGMv2_1493_6_29
Type: TC
Location: 30772 - 31479 (+)
Type: TC
Location: 30772 - 31479 (+)
Gene ID: HRGMv2_1493_6_30
Type: pfam
Location: 31607 - 32317 (-)
Type: pfam
Location: 31607 - 32317 (-)
Gene ID: HRGMv2_1493_6_31
Type: pfam
Location: 32314 - 34230 (-)
Type: pfam
Location: 32314 - 34230 (-)
Gene ID: HRGMv2_1493_6_32
Type: TC
Location: 34324 - 35091 (-)
Type: TC
Location: 34324 - 35091 (-)
Gene ID: HRGMv2_1493_6_33
Type: pfam
Location: 35220 - 37250 (-)
Type: pfam
Location: 35220 - 37250 (-)
Gene ID: HRGMv2_1493_6_34
Type: TC
Location: 37323 - 38117 (-)
Type: TC
Location: 37323 - 38117 (-)
Gene ID: HRGMv2_1493_6_35
Type: TC
Location: 38110 - 39033 (-)
Type: TC
Location: 38110 - 39033 (-)
Gene ID: HRGMv2_1493_6_36
Type: TC
Location: 39238 - 40218 (-)
Type: TC
Location: 39238 - 40218 (-)
Gene ID: HRGMv2_1493_6_37
Type:
Location: 40379 - 41164 (-)
Type:
Location: 40379 - 41164 (-)
Gene ID: HRGMv2_1493_6_38
Type: pfam
Location: 41414 - 42817 (-)
Type: pfam
Location: 41414 - 42817 (-)
Gene ID: HRGMv2_1493_6_39
Type: TC
Location: 42999 - 43562 (-)
Type: TC
Location: 42999 - 43562 (-)
Gene ID: HRGMv2_1493_6_40
Type: peptidase
Location: 43807 - 44706 (+)
Type: peptidase
Location: 43807 - 44706 (+)
Gene ID: HRGMv2_1493_6_41
Type:
Location: 44754 - 45074 (+)
Type:
Location: 44754 - 45074 (+)
Gene ID: HRGMv2_1493_6_42
Type: TC
Location: 45196 - 47556 (+)
Type: TC
Location: 45196 - 47556 (+)
Gene ID: HRGMv2_1493_6_43
Type: TC
Location: 47680 - 48876 (+)
Type: TC
Location: 47680 - 48876 (+)
Gene ID: HRGMv2_1493_6_44
Type: CAZyme
Location: 49031 - 50407 (+)
Type: CAZyme
Location: 49031 - 50407 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_1493_6_33 | vegan > omnivore | 1.97123 | 0.01260 |
| HRGMv2_1493_6_33 | vegetarian > omnivore | 1.45955 | 0.01054 |