Cluster: HRGMv2_1492_CGC7

🧬 Cluster Details

Gene Type	Contig ID	Protein ID	Start	Stop	Direction	Protein Family
TC	HRGMv2_1492_8	HRGMv2_1492_8_8	6906	8348	+	3.A.1.8.1
TC	HRGMv2_1492_8	HRGMv2_1492_8_9	8352	9422	+	3.A.1.1.3
pfam	HRGMv2_1492_8	HRGMv2_1492_8_10	9868	11151	+	HGD-D
TC	HRGMv2_1492_8	HRGMv2_1492_8_11	11387	13000	+	3.A.1.5.11
TC	HRGMv2_1492_8	HRGMv2_1492_8_12	13087	14040	+	3.A.1.5.11
TC	HRGMv2_1492_8	HRGMv2_1492_8_13	14040	14867	+	3.A.1.5.39
TC	HRGMv2_1492_8	HRGMv2_1492_8_14	14871	15869	+	3.A.1.5.37
TC	HRGMv2_1492_8	HRGMv2_1492_8_15	15856	16641	+	3.A.1.5.36
pfam	HRGMv2_1492_8	HRGMv2_1492_8_16	16719	17882	+	HGD-D
pfam	HRGMv2_1492_8	HRGMv2_1492_8_17	17934	18698	+	BcrAD_BadFG
CAZyme	HRGMv2_1492_8	HRGMv2_1492_8_18	18713	19957	+	GT4

Gene ID: HRGMv2_1492_8_8
Type: TC
Location: 6906 - 8348 (+)

Gene ID: HRGMv2_1492_8_9
Type: TC
Location: 8352 - 9422 (+)

Gene ID: HRGMv2_1492_8_10
Type: pfam
Location: 9868 - 11151 (+)

Gene ID: HRGMv2_1492_8_11
Type: TC
Location: 11387 - 13000 (+)

Gene ID: HRGMv2_1492_8_12
Type: TC
Location: 13087 - 14040 (+)

Gene ID: HRGMv2_1492_8_13
Type: TC
Location: 14040 - 14867 (+)

Gene ID: HRGMv2_1492_8_14
Type: TC
Location: 14871 - 15869 (+)

Gene ID: HRGMv2_1492_8_15
Type: TC
Location: 15856 - 16641 (+)

Gene ID: HRGMv2_1492_8_16
Type: pfam
Location: 16719 - 17882 (+)

Gene ID: HRGMv2_1492_8_17
Type: pfam
Location: 17934 - 18698 (+)

Gene ID: HRGMv2_1492_8_18
Type: CAZyme
Location: 18713 - 19957 (+)

Taxonomic Lineage

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Gene Level Read Mapping

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Gene ID	Condition Pair	log2FC	FDR P-value
HRGMv2_1492_8_11	vegan > omnivore	3.50706	0.00701
HRGMv2_1492_8_11	vegetarian > omnivore	1.16009	0.02737
HRGMv2_1492_8_12	vegan > omnivore	2.62805	0.00701
HRGMv2_1492_8_13	vegan > omnivore	3.11584	0.00701
HRGMv2_1492_8_13	vegetarian > omnivore	1.00957	0.02737
HRGMv2_1492_8_15	vegan > omnivore	2.68283	0.00701