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Cluster: HRGMv2_1492_CGC17

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1492_26 HRGMv2_1492_26_6 4144 5520 - GH13_20
TC HRGMv2_1492_26 HRGMv2_1492_26_7 5703 6899 - 2.A.1.2.18
TC HRGMv2_1492_26 HRGMv2_1492_26_8 7021 9381 - 9.A.8.1.6
NULL(UNKNOWN) HRGMv2_1492_26 HRGMv2_1492_26_9 9503 9823 - NULL(UNKNOWN)
[View Structural Homologs]
peptidase HRGMv2_1492_26 HRGMv2_1492_26_10 9871 10770 - S09.UPW
TC HRGMv2_1492_26 HRGMv2_1492_26_11 11015 11578 + 4.A.1.2.6
pfam HRGMv2_1492_26 HRGMv2_1492_26_12 11760 13163 + tRNA-synt_2 | tRNA_anti-codon
NULL(UNKNOWN) HRGMv2_1492_26 HRGMv2_1492_26_13 13413 14198 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_1492_26 HRGMv2_1492_26_14 14359 15339 + 3.A.1.34.1
NULL(UNKNOWN) HRGMv2_1492_26 HRGMv2_1492_26_15 15259 15465 - NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_1492_26 HRGMv2_1492_26_16 15544 16467 + 3.A.1.34.1
TC HRGMv2_1492_26 HRGMv2_1492_26_17 16460 17254 + 3.A.1.34.1
pfam HRGMv2_1492_26 HRGMv2_1492_26_18 17327 19354 + Metallophos | 5_nucleotid_C
TC HRGMv2_1492_26 HRGMv2_1492_26_19 19483 20250 + 1.A.23.4.2
pfam HRGMv2_1492_26 HRGMv2_1492_26_20 20342 22258 + Bmp
pfam HRGMv2_1492_26 HRGMv2_1492_26_21 22255 22965 + Metallophos | Metallophos_2
TC HRGMv2_1492_26 HRGMv2_1492_26_22 23093 23800 - 1.C.82.1.1
Gene ID: HRGMv2_1492_26_6
Type: CAZyme
Location: 4144 - 5520 (-)
Gene ID: HRGMv2_1492_26_7
Type: TC
Location: 5703 - 6899 (-)
Gene ID: HRGMv2_1492_26_8
Type: TC
Location: 7021 - 9381 (-)
Gene ID: HRGMv2_1492_26_9
Type:
Location: 9503 - 9823 (-)
Gene ID: HRGMv2_1492_26_10
Type: peptidase
Location: 9871 - 10770 (-)
Gene ID: HRGMv2_1492_26_11
Type: TC
Location: 11015 - 11578 (+)
Gene ID: HRGMv2_1492_26_12
Type: pfam
Location: 11760 - 13163 (+)
Gene ID: HRGMv2_1492_26_13
Type:
Location: 13413 - 14198 (+)
Gene ID: HRGMv2_1492_26_14
Type: TC
Location: 14359 - 15339 (+)
Gene ID: HRGMv2_1492_26_15
Type:
Location: 15259 - 15465 (-)
Gene ID: HRGMv2_1492_26_16
Type: TC
Location: 15544 - 16467 (+)
Gene ID: HRGMv2_1492_26_17
Type: TC
Location: 16460 - 17254 (+)
Gene ID: HRGMv2_1492_26_18
Type: pfam
Location: 17327 - 19354 (+)
Gene ID: HRGMv2_1492_26_19
Type: TC
Location: 19483 - 20250 (+)
Gene ID: HRGMv2_1492_26_20
Type: pfam
Location: 20342 - 22258 (+)
Gene ID: HRGMv2_1492_26_21
Type: pfam
Location: 22255 - 22965 (+)
Gene ID: HRGMv2_1492_26_22
Type: TC
Location: 23093 - 23800 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1492_26_18 vegan > omnivore 1.83388 0.00701
HRGMv2_1492_26_18 vegetarian > omnivore 1.39498 0.01557

🧭 Explore Read Mapping of CGC

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