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Cluster: HRGMv2_1492_CGC10

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1492_9 HRGMv2_1492_9_52 61654 62823 - CE9
STP HRGMv2_1492_9 HRGMv2_1492_9_53 62941 64107 - SIS | SIS
TF HRGMv2_1492_9 HRGMv2_1492_9_54 64222 64953 - GntR
TC HRGMv2_1492_9 HRGMv2_1492_9_55 65138 66220 - 4.A.6.1.4
TC HRGMv2_1492_9 HRGMv2_1492_9_56 66210 67010 - 4.A.6.1.4
TC HRGMv2_1492_9 HRGMv2_1492_9_57 67101 67583 - 4.A.6.1.4
pfam HRGMv2_1492_9 HRGMv2_1492_9_58 67620 67901 - YajC
TC HRGMv2_1492_9 HRGMv2_1492_9_59 67901 68344 - 4.A.6.1.16
Gene ID: HRGMv2_1492_9_52
Type: CAZyme
Location: 61654 - 62823 (-)
Gene ID: HRGMv2_1492_9_53
Type: STP
Location: 62941 - 64107 (-)
Gene ID: HRGMv2_1492_9_54
Type: TF
Location: 64222 - 64953 (-)
Gene ID: HRGMv2_1492_9_55
Type: TC
Location: 65138 - 66220 (-)
Gene ID: HRGMv2_1492_9_56
Type: TC
Location: 66210 - 67010 (-)
Gene ID: HRGMv2_1492_9_57
Type: TC
Location: 67101 - 67583 (-)
Gene ID: HRGMv2_1492_9_58
Type: pfam
Location: 67620 - 67901 (-)
Gene ID: HRGMv2_1492_9_59
Type: TC
Location: 67901 - 68344 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1492_9_58 vegan > omnivore 1.03162 0.00701

🧭 Explore Read Mapping of CGC

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