Cluster: HRGMv2_1491_CGC8
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1491
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1491_9 | HRGMv2_1491_9_33 | 27964 | 28437 | + | 4.A.6.1.18 |
| TC | HRGMv2_1491_9 | HRGMv2_1491_9_34 | 28447 | 29232 | + | 4.A.6.1.13 |
| TC | HRGMv2_1491_9 | HRGMv2_1491_9_35 | 29235 | 30068 | + | 4.A.6.1.13 |
| pfam | HRGMv2_1491_9 | HRGMv2_1491_9_36 | 30095 | 30493 | + | EIIA-man |
| CAZyme | HRGMv2_1491_9 | HRGMv2_1491_9_37 | 30506 | 31630 | + | GH172 |
Gene ID: HRGMv2_1491_9_33
Type: TC
Location: 27964 - 28437 (+)
Type: TC
Location: 27964 - 28437 (+)
Gene ID: HRGMv2_1491_9_34
Type: TC
Location: 28447 - 29232 (+)
Type: TC
Location: 28447 - 29232 (+)
Gene ID: HRGMv2_1491_9_35
Type: TC
Location: 29235 - 30068 (+)
Type: TC
Location: 29235 - 30068 (+)
Gene ID: HRGMv2_1491_9_36
Type: pfam
Location: 30095 - 30493 (+)
Type: pfam
Location: 30095 - 30493 (+)
Gene ID: HRGMv2_1491_9_37
Type: CAZyme
Location: 30506 - 31630 (+)
Type: CAZyme
Location: 30506 - 31630 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_1491_9_33 | vegan > omnivore | 1.09342 | 0.00364 |
| HRGMv2_1491_9_37 | vegan > omnivore | 1.01577 | 0.00364 |