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Cluster: HRGMv2_1491_CGC17

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1491_47 HRGMv2_1491_47_5 3385 4761 - GH13_20
TC HRGMv2_1491_47 HRGMv2_1491_47_6 4915 6111 - 2.A.1.2.18
pfam HRGMv2_1491_47 HRGMv2_1491_47_7 6215 6697 - tRNA_edit
TC HRGMv2_1491_47 HRGMv2_1491_47_8 6793 9150 - 9.A.8.1.6
peptidase HRGMv2_1491_47 HRGMv2_1491_47_9 9563 10465 - S09.UPW
TC HRGMv2_1491_47 HRGMv2_1491_47_10 10710 11273 + 4.A.1.2.6
pfam HRGMv2_1491_47 HRGMv2_1491_47_11 11455 12858 + tRNA-synt_2 | tRNA_anti-codon
NULL(UNKNOWN) HRGMv2_1491_47 HRGMv2_1491_47_12 13108 13893 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_1491_47 HRGMv2_1491_47_13 14054 15034 + 3.A.1.34.1
TC HRGMv2_1491_47 HRGMv2_1491_47_14 15239 16162 + 3.A.1.34.1
TC HRGMv2_1491_47 HRGMv2_1491_47_15 16155 16949 + 3.A.1.34.1
Gene ID: HRGMv2_1491_47_5
Type: CAZyme
Location: 3385 - 4761 (-)
Gene ID: HRGMv2_1491_47_6
Type: TC
Location: 4915 - 6111 (-)
Gene ID: HRGMv2_1491_47_7
Type: pfam
Location: 6215 - 6697 (-)
Gene ID: HRGMv2_1491_47_8
Type: TC
Location: 6793 - 9150 (-)
Gene ID: HRGMv2_1491_47_9
Type: peptidase
Location: 9563 - 10465 (-)
Gene ID: HRGMv2_1491_47_10
Type: TC
Location: 10710 - 11273 (+)
Gene ID: HRGMv2_1491_47_11
Type: pfam
Location: 11455 - 12858 (+)
Gene ID: HRGMv2_1491_47_12
Type:
Location: 13108 - 13893 (+)
Gene ID: HRGMv2_1491_47_13
Type: TC
Location: 14054 - 15034 (+)
Gene ID: HRGMv2_1491_47_14
Type: TC
Location: 15239 - 16162 (+)
Gene ID: HRGMv2_1491_47_15
Type: TC
Location: 16155 - 16949 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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