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Cluster: HRGMv2_1491_CGC14

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1491_34 HRGMv2_1491_34_7 4621 5790 - CE9
STP HRGMv2_1491_34 HRGMv2_1491_34_8 5908 7074 - SIS | SIS
TF HRGMv2_1491_34 HRGMv2_1491_34_9 7189 7920 - GntR
TC HRGMv2_1491_34 HRGMv2_1491_34_10 8105 9187 - 4.A.6.1.4
TC HRGMv2_1491_34 HRGMv2_1491_34_11 9177 9977 - 4.A.6.1.4
TC HRGMv2_1491_34 HRGMv2_1491_34_12 10068 10550 - 4.A.6.1.4
pfam HRGMv2_1491_34 HRGMv2_1491_34_13 10587 10868 - YajC
TC HRGMv2_1491_34 HRGMv2_1491_34_14 10868 11311 - 4.A.6.1.16
Gene ID: HRGMv2_1491_34_7
Type: CAZyme
Location: 4621 - 5790 (-)
Gene ID: HRGMv2_1491_34_8
Type: STP
Location: 5908 - 7074 (-)
Gene ID: HRGMv2_1491_34_9
Type: TF
Location: 7189 - 7920 (-)
Gene ID: HRGMv2_1491_34_10
Type: TC
Location: 8105 - 9187 (-)
Gene ID: HRGMv2_1491_34_11
Type: TC
Location: 9177 - 9977 (-)
Gene ID: HRGMv2_1491_34_12
Type: TC
Location: 10068 - 10550 (-)
Gene ID: HRGMv2_1491_34_13
Type: pfam
Location: 10587 - 10868 (-)
Gene ID: HRGMv2_1491_34_14
Type: TC
Location: 10868 - 11311 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1491_34_13 vegan > omnivore 1.00223 0.00364

🧭 Explore Read Mapping of CGC

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