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Cluster: HRGMv2_1490_CGC8

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1490_37 HRGMv2_1490_37_1 1 948 - CE9
STP HRGMv2_1490_37 HRGMv2_1490_37_2 1066 2232 - SIS | SIS
TF HRGMv2_1490_37 HRGMv2_1490_37_3 2347 3078 - GntR
TC HRGMv2_1490_37 HRGMv2_1490_37_4 3263 4345 - 4.A.6.1.4
TC HRGMv2_1490_37 HRGMv2_1490_37_5 4335 5135 - 4.A.6.1.4
TC HRGMv2_1490_37 HRGMv2_1490_37_6 5226 5708 - 4.A.6.1.4
pfam HRGMv2_1490_37 HRGMv2_1490_37_7 5745 6026 - YajC
TC HRGMv2_1490_37 HRGMv2_1490_37_8 6026 6469 - 4.A.6.1.16
Gene ID: HRGMv2_1490_37_1
Type: CAZyme
Location: 1 - 948 (-)
Gene ID: HRGMv2_1490_37_2
Type: STP
Location: 1066 - 2232 (-)
Gene ID: HRGMv2_1490_37_3
Type: TF
Location: 2347 - 3078 (-)
Gene ID: HRGMv2_1490_37_4
Type: TC
Location: 3263 - 4345 (-)
Gene ID: HRGMv2_1490_37_5
Type: TC
Location: 4335 - 5135 (-)
Gene ID: HRGMv2_1490_37_6
Type: TC
Location: 5226 - 5708 (-)
Gene ID: HRGMv2_1490_37_7
Type: pfam
Location: 5745 - 6026 (-)
Gene ID: HRGMv2_1490_37_8
Type: TC
Location: 6026 - 6469 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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