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Cluster: HRGMv2_1489_CGC9

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1489_38 HRGMv2_1489_38_1 682 1125 + 4.A.6.1.16
pfam HRGMv2_1489_38 HRGMv2_1489_38_2 1125 1406 + YajC
TC HRGMv2_1489_38 HRGMv2_1489_38_3 1443 1925 + 4.A.6.1.4
TC HRGMv2_1489_38 HRGMv2_1489_38_4 2016 2816 + 4.A.6.1.4
TC HRGMv2_1489_38 HRGMv2_1489_38_5 2806 3888 + 4.A.6.1.4
TF HRGMv2_1489_38 HRGMv2_1489_38_6 4073 4804 + GntR
STP HRGMv2_1489_38 HRGMv2_1489_38_7 4919 6085 + SIS | SIS
CAZyme HRGMv2_1489_38 HRGMv2_1489_38_8 6204 7373 + CE9
Gene ID: HRGMv2_1489_38_1
Type: TC
Location: 682 - 1125 (+)
Gene ID: HRGMv2_1489_38_2
Type: pfam
Location: 1125 - 1406 (+)
Gene ID: HRGMv2_1489_38_3
Type: TC
Location: 1443 - 1925 (+)
Gene ID: HRGMv2_1489_38_4
Type: TC
Location: 2016 - 2816 (+)
Gene ID: HRGMv2_1489_38_5
Type: TC
Location: 2806 - 3888 (+)
Gene ID: HRGMv2_1489_38_6
Type: TF
Location: 4073 - 4804 (+)
Gene ID: HRGMv2_1489_38_7
Type: STP
Location: 4919 - 6085 (+)
Gene ID: HRGMv2_1489_38_8
Type: CAZyme
Location: 6204 - 7373 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1489_38_2 vegan > omnivore 1.08368 0.00701

🧭 Explore Read Mapping of CGC

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