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Cluster: HRGMv2_1489_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1489_5 HRGMv2_1489_5_10 13687 15369 + 2.A.66.4.4
pfam HRGMv2_1489_5 HRGMv2_1489_5_11 15376 17316 + GIY-YIG | UVR | UvrC_RNaseH_dom | HHH_2 | HHH_5 | UvrC_RNaseH
TC HRGMv2_1489_5 HRGMv2_1489_5_12 17682 19295 + 3.A.1.5.27
TC HRGMv2_1489_5 HRGMv2_1489_5_13 19453 20409 + 3.A.1.5.38
TC HRGMv2_1489_5 HRGMv2_1489_5_14 20413 22428 + 3.A.1.5.25
TC HRGMv2_1489_5 HRGMv2_1489_5_15 22429 23256 + 3.A.1.5.27
CAZyme HRGMv2_1489_5 HRGMv2_1489_5_16 23430 24314 + CE7
Gene ID: HRGMv2_1489_5_10
Type: TC
Location: 13687 - 15369 (+)
Gene ID: HRGMv2_1489_5_11
Type: pfam
Location: 15376 - 17316 (+)
Gene ID: HRGMv2_1489_5_12
Type: TC
Location: 17682 - 19295 (+)
Gene ID: HRGMv2_1489_5_13
Type: TC
Location: 19453 - 20409 (+)
Gene ID: HRGMv2_1489_5_14
Type: TC
Location: 20413 - 22428 (+)
Gene ID: HRGMv2_1489_5_15
Type: TC
Location: 22429 - 23256 (+)
Gene ID: HRGMv2_1489_5_16
Type: CAZyme
Location: 23430 - 24314 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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