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Cluster: HRGMv2_1488_CGC6

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1488_6 HRGMv2_1488_6_51 55441 56208 - 1.A.23.4.2
pfam HRGMv2_1488_6 HRGMv2_1488_6_52 56336 58363 - Metallophos | 5_nucleotid_C
TC HRGMv2_1488_6 HRGMv2_1488_6_53 58521 59315 - 3.A.1.34.1
TC HRGMv2_1488_6 HRGMv2_1488_6_54 59308 60231 - 3.A.1.34.1
TC HRGMv2_1488_6 HRGMv2_1488_6_55 60436 61416 - 3.A.1.34.1
NULL(UNKNOWN) HRGMv2_1488_6 HRGMv2_1488_6_56 61577 62362 - NULL(UNKNOWN)
[View Structural Homologs]
pfam HRGMv2_1488_6 HRGMv2_1488_6_57 62612 64015 - tRNA-synt_2 | tRNA_anti-codon
TC HRGMv2_1488_6 HRGMv2_1488_6_58 64197 64760 - 4.A.1.2.6
peptidase HRGMv2_1488_6 HRGMv2_1488_6_59 65004 65903 + S09.UPW
NULL(UNKNOWN) HRGMv2_1488_6 HRGMv2_1488_6_60 65951 66271 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_1488_6 HRGMv2_1488_6_61 66393 68753 + 9.A.8.1.6
TC HRGMv2_1488_6 HRGMv2_1488_6_62 68878 70074 + 2.A.1.2.18
CAZyme HRGMv2_1488_6 HRGMv2_1488_6_63 70228 71604 + GH13_20
Gene ID: HRGMv2_1488_6_51
Type: TC
Location: 55441 - 56208 (-)
Gene ID: HRGMv2_1488_6_52
Type: pfam
Location: 56336 - 58363 (-)
Gene ID: HRGMv2_1488_6_53
Type: TC
Location: 58521 - 59315 (-)
Gene ID: HRGMv2_1488_6_54
Type: TC
Location: 59308 - 60231 (-)
Gene ID: HRGMv2_1488_6_55
Type: TC
Location: 60436 - 61416 (-)
Gene ID: HRGMv2_1488_6_56
Type:
Location: 61577 - 62362 (-)
Gene ID: HRGMv2_1488_6_57
Type: pfam
Location: 62612 - 64015 (-)
Gene ID: HRGMv2_1488_6_58
Type: TC
Location: 64197 - 64760 (-)
Gene ID: HRGMv2_1488_6_59
Type: peptidase
Location: 65004 - 65903 (+)
Gene ID: HRGMv2_1488_6_60
Type:
Location: 65951 - 66271 (+)
Gene ID: HRGMv2_1488_6_61
Type: TC
Location: 66393 - 68753 (+)
Gene ID: HRGMv2_1488_6_62
Type: TC
Location: 68878 - 70074 (+)
Gene ID: HRGMv2_1488_6_63
Type: CAZyme
Location: 70228 - 71604 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1488_6_52 vegan > omnivore 1.76182 0.00863
HRGMv2_1488_6_52 vegetarian > omnivore 1.33055 0.01882

🧭 Explore Read Mapping of CGC

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