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Cluster: HRGMv2_1488_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1488_3 HRGMv2_1488_3_42 44478 44921 + 4.A.6.1.16
pfam HRGMv2_1488_3 HRGMv2_1488_3_43 44921 45202 + YajC
TC HRGMv2_1488_3 HRGMv2_1488_3_44 45239 45721 + 4.A.6.1.4
TC HRGMv2_1488_3 HRGMv2_1488_3_45 45809 46609 + 4.A.6.1.4
TC HRGMv2_1488_3 HRGMv2_1488_3_46 46599 47681 + 4.A.6.1.4
TF HRGMv2_1488_3 HRGMv2_1488_3_47 47866 48597 + GntR
STP HRGMv2_1488_3 HRGMv2_1488_3_48 48712 49878 + SIS | SIS
CAZyme HRGMv2_1488_3 HRGMv2_1488_3_49 49997 51166 + CE9
Gene ID: HRGMv2_1488_3_42
Type: TC
Location: 44478 - 44921 (+)
Gene ID: HRGMv2_1488_3_43
Type: pfam
Location: 44921 - 45202 (+)
Gene ID: HRGMv2_1488_3_44
Type: TC
Location: 45239 - 45721 (+)
Gene ID: HRGMv2_1488_3_45
Type: TC
Location: 45809 - 46609 (+)
Gene ID: HRGMv2_1488_3_46
Type: TC
Location: 46599 - 47681 (+)
Gene ID: HRGMv2_1488_3_47
Type: TF
Location: 47866 - 48597 (+)
Gene ID: HRGMv2_1488_3_48
Type: STP
Location: 48712 - 49878 (+)
Gene ID: HRGMv2_1488_3_49
Type: CAZyme
Location: 49997 - 51166 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1488_3_43 vegan > omnivore 1.04927 0.00863

🧭 Explore Read Mapping of CGC

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