Cluster: HRGMv2_1488_CGC17
🧬 Cluster Details
- Gene Count: 14
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_1488
- CGC Family ID: CGCFAM_03592
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1488_38 | HRGMv2_1488_38_3 | 3626 | 4714 | - | 3.D.1.4.2 |
| pfam | HRGMv2_1488_38 | HRGMv2_1488_38_4 | 4720 | 5436 | - | Complex1_30kDa |
| TC | HRGMv2_1488_38 | HRGMv2_1488_38_5 | 5436 | 6041 | - | 3.D.1.4.2 |
| TC | HRGMv2_1488_38 | HRGMv2_1488_38_6 | 6054 | 8936 | - | 3.D.1.4.2 |
| TF | HRGMv2_1488_38 | HRGMv2_1488_38_7 | 9224 | 9619 | - | 0039939 |
| STP | HRGMv2_1488_38 | HRGMv2_1488_38_8 | 10069 | 12099 | - | Pyr_redox_2 |
| CAZyme | HRGMv2_1488_38 | HRGMv2_1488_38_9 | 12643 | 14070 | - | GH140 |
| CAZyme | HRGMv2_1488_38 | HRGMv2_1488_38_10 | 14140 | 15384 | - | GH1 |
| pfam | HRGMv2_1488_38 | HRGMv2_1488_38_11 | 15477 | 16232 | - | YdjC |
| TF | HRGMv2_1488_38 | HRGMv2_1488_38_12 | 16463 | 18361 | + | HTH_11 |
| CAZyme | HRGMv2_1488_38 | HRGMv2_1488_38_13 | 18413 | 19789 | + | GH1 |
| pfam | HRGMv2_1488_38 | HRGMv2_1488_38_14 | 19886 | 20245 | + | PTS_IIA |
| TC | HRGMv2_1488_38 | HRGMv2_1488_38_15 | 20500 | 21762 | - | 4.A.3.2.2 |
| TC | HRGMv2_1488_38 | HRGMv2_1488_38_16 | 21777 | 22082 | - | 4.A.3.2.6 |
Gene ID: HRGMv2_1488_38_3
Type: TC
Location: 3626 - 4714 (-)
Type: TC
Location: 3626 - 4714 (-)
Gene ID: HRGMv2_1488_38_4
Type: pfam
Location: 4720 - 5436 (-)
Type: pfam
Location: 4720 - 5436 (-)
Gene ID: HRGMv2_1488_38_5
Type: TC
Location: 5436 - 6041 (-)
Type: TC
Location: 5436 - 6041 (-)
Gene ID: HRGMv2_1488_38_6
Type: TC
Location: 6054 - 8936 (-)
Type: TC
Location: 6054 - 8936 (-)
Gene ID: HRGMv2_1488_38_7
Type: TF
Location: 9224 - 9619 (-)
Type: TF
Location: 9224 - 9619 (-)
Gene ID: HRGMv2_1488_38_8
Type: STP
Location: 10069 - 12099 (-)
Type: STP
Location: 10069 - 12099 (-)
Gene ID: HRGMv2_1488_38_9
Type: CAZyme
Location: 12643 - 14070 (-)
Type: CAZyme
Location: 12643 - 14070 (-)
Gene ID: HRGMv2_1488_38_10
Type: CAZyme
Location: 14140 - 15384 (-)
Type: CAZyme
Location: 14140 - 15384 (-)
Gene ID: HRGMv2_1488_38_11
Type: pfam
Location: 15477 - 16232 (-)
Type: pfam
Location: 15477 - 16232 (-)
Gene ID: HRGMv2_1488_38_12
Type: TF
Location: 16463 - 18361 (+)
Type: TF
Location: 16463 - 18361 (+)
Gene ID: HRGMv2_1488_38_13
Type: CAZyme
Location: 18413 - 19789 (+)
Type: CAZyme
Location: 18413 - 19789 (+)
Gene ID: HRGMv2_1488_38_14
Type: pfam
Location: 19886 - 20245 (+)
Type: pfam
Location: 19886 - 20245 (+)
Gene ID: HRGMv2_1488_38_15
Type: TC
Location: 20500 - 21762 (-)
Type: TC
Location: 20500 - 21762 (-)
Gene ID: HRGMv2_1488_38_16
Type: TC
Location: 21777 - 22082 (-)
Type: TC
Location: 21777 - 22082 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.