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Cluster: HRGMv2_1488_CGC13

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1488_21 HRGMv2_1488_21_17 16558 17484 - CE7
TC HRGMv2_1488_21 HRGMv2_1488_21_18 17616 18443 - 3.A.1.5.27
TC HRGMv2_1488_21 HRGMv2_1488_21_19 18444 20459 - 3.A.1.5.25
TC HRGMv2_1488_21 HRGMv2_1488_21_20 20463 21419 - 3.A.1.5.38
TC HRGMv2_1488_21 HRGMv2_1488_21_21 21577 23190 - 3.A.1.5.27
pfam HRGMv2_1488_21 HRGMv2_1488_21_22 23556 25496 - GIY-YIG | UVR | UvrC_RNaseH_dom | HHH_2 | HHH_5 | UvrC_RNaseH
TC HRGMv2_1488_21 HRGMv2_1488_21_23 25503 27185 - 2.A.66.4.4
Gene ID: HRGMv2_1488_21_17
Type: CAZyme
Location: 16558 - 17484 (-)
Gene ID: HRGMv2_1488_21_18
Type: TC
Location: 17616 - 18443 (-)
Gene ID: HRGMv2_1488_21_19
Type: TC
Location: 18444 - 20459 (-)
Gene ID: HRGMv2_1488_21_20
Type: TC
Location: 20463 - 21419 (-)
Gene ID: HRGMv2_1488_21_21
Type: TC
Location: 21577 - 23190 (-)
Gene ID: HRGMv2_1488_21_22
Type: pfam
Location: 23556 - 25496 (-)
Gene ID: HRGMv2_1488_21_23
Type: TC
Location: 25503 - 27185 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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