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Cluster: HRGMv2_1487_CGC6

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1487_31 HRGMv2_1487_31_3 2064 2990 - CE7
TC HRGMv2_1487_31 HRGMv2_1487_31_4 3122 3949 - 3.A.1.5.27
TC HRGMv2_1487_31 HRGMv2_1487_31_5 3950 5965 - 3.A.1.5.25
TC HRGMv2_1487_31 HRGMv2_1487_31_6 5969 6925 - 3.A.1.5.38
TC HRGMv2_1487_31 HRGMv2_1487_31_7 7081 8694 - 3.A.1.5.27
pfam HRGMv2_1487_31 HRGMv2_1487_31_8 9060 11000 - GIY-YIG | UVR | UvrC_RNaseH_dom | HHH_2 | HHH_5 | UvrC_RNaseH
TC HRGMv2_1487_31 HRGMv2_1487_31_9 11007 12689 - 2.A.66.4.4
Gene ID: HRGMv2_1487_31_3
Type: CAZyme
Location: 2064 - 2990 (-)
Gene ID: HRGMv2_1487_31_4
Type: TC
Location: 3122 - 3949 (-)
Gene ID: HRGMv2_1487_31_5
Type: TC
Location: 3950 - 5965 (-)
Gene ID: HRGMv2_1487_31_6
Type: TC
Location: 5969 - 6925 (-)
Gene ID: HRGMv2_1487_31_7
Type: TC
Location: 7081 - 8694 (-)
Gene ID: HRGMv2_1487_31_8
Type: pfam
Location: 9060 - 11000 (-)
Gene ID: HRGMv2_1487_31_9
Type: TC
Location: 11007 - 12689 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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