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Cluster: HRGMv2_1487_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1487_7 HRGMv2_1487_7_11 7565 8734 - CE9
STP HRGMv2_1487_7 HRGMv2_1487_7_12 8853 10019 - SIS | SIS
TF HRGMv2_1487_7 HRGMv2_1487_7_13 10134 10865 - GntR
TC HRGMv2_1487_7 HRGMv2_1487_7_14 11051 12133 - 4.A.6.1.4
TC HRGMv2_1487_7 HRGMv2_1487_7_15 12123 12923 - 4.A.6.1.4
TC HRGMv2_1487_7 HRGMv2_1487_7_16 13014 13496 - 4.A.6.1.4
pfam HRGMv2_1487_7 HRGMv2_1487_7_17 13533 13814 - YajC
TC HRGMv2_1487_7 HRGMv2_1487_7_18 13814 14257 - 4.A.6.1.16
Gene ID: HRGMv2_1487_7_11
Type: CAZyme
Location: 7565 - 8734 (-)
Gene ID: HRGMv2_1487_7_12
Type: STP
Location: 8853 - 10019 (-)
Gene ID: HRGMv2_1487_7_13
Type: TF
Location: 10134 - 10865 (-)
Gene ID: HRGMv2_1487_7_14
Type: TC
Location: 11051 - 12133 (-)
Gene ID: HRGMv2_1487_7_15
Type: TC
Location: 12123 - 12923 (-)
Gene ID: HRGMv2_1487_7_16
Type: TC
Location: 13014 - 13496 (-)
Gene ID: HRGMv2_1487_7_17
Type: pfam
Location: 13533 - 13814 (-)
Gene ID: HRGMv2_1487_7_18
Type: TC
Location: 13814 - 14257 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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