dbCAN Logo

Cluster: HRGMv2_1485_CGC5

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1485_13 HRGMv2_1485_13_5 3472 4641 - CE9
STP HRGMv2_1485_13 HRGMv2_1485_13_6 4759 5925 - SIS | SIS
TF HRGMv2_1485_13 HRGMv2_1485_13_7 6040 6771 - GntR
TC HRGMv2_1485_13 HRGMv2_1485_13_8 6957 8039 - 4.A.6.1.4
TC HRGMv2_1485_13 HRGMv2_1485_13_9 8029 8829 - 4.A.6.1.4
TC HRGMv2_1485_13 HRGMv2_1485_13_10 8920 9402 - 4.A.6.1.4
pfam HRGMv2_1485_13 HRGMv2_1485_13_11 9439 9720 - YajC
TC HRGMv2_1485_13 HRGMv2_1485_13_12 9720 10163 - 4.A.6.1.16
Gene ID: HRGMv2_1485_13_5
Type: CAZyme
Location: 3472 - 4641 (-)
Gene ID: HRGMv2_1485_13_6
Type: STP
Location: 4759 - 5925 (-)
Gene ID: HRGMv2_1485_13_7
Type: TF
Location: 6040 - 6771 (-)
Gene ID: HRGMv2_1485_13_8
Type: TC
Location: 6957 - 8039 (-)
Gene ID: HRGMv2_1485_13_9
Type: TC
Location: 8029 - 8829 (-)
Gene ID: HRGMv2_1485_13_10
Type: TC
Location: 8920 - 9402 (-)
Gene ID: HRGMv2_1485_13_11
Type: pfam
Location: 9439 - 9720 (-)
Gene ID: HRGMv2_1485_13_12
Type: TC
Location: 9720 - 10163 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1485_13_11 vegan > omnivore 1.02125 0.00863

🧭 Explore Read Mapping of CGC

← Back to Cluster List