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Cluster: HRGMv2_1485_CGC11

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1485_31 HRGMv2_1485_31_4 3162 5612 - 4.A.1.1.8
NULL(UNKNOWN) HRGMv2_1485_31 HRGMv2_1485_31_5 5634 5753 + NULL(UNKNOWN)
[View Structural Homologs]
TF HRGMv2_1485_31 HRGMv2_1485_31_6 5837 6556 + GntR
TC HRGMv2_1485_31 HRGMv2_1485_31_7 6863 8179 + 3.A.1.1.45
TC HRGMv2_1485_31 HRGMv2_1485_31_8 8267 9121 + 3.A.1.1.45
TC HRGMv2_1485_31 HRGMv2_1485_31_9 9121 9960 + 3.A.1.1.45
TC HRGMv2_1485_31 HRGMv2_1485_31_10 10029 11228 + 3.A.1.1.22
CAZyme HRGMv2_1485_31 HRGMv2_1485_31_11 11684 13951 - GT35
CAZyme HRGMv2_1485_31 HRGMv2_1485_31_12 14079 15584 - GH77
Gene ID: HRGMv2_1485_31_4
Type: TC
Location: 3162 - 5612 (-)
Gene ID: HRGMv2_1485_31_5
Type:
Location: 5634 - 5753 (+)
Gene ID: HRGMv2_1485_31_6
Type: TF
Location: 5837 - 6556 (+)
Gene ID: HRGMv2_1485_31_7
Type: TC
Location: 6863 - 8179 (+)
Gene ID: HRGMv2_1485_31_8
Type: TC
Location: 8267 - 9121 (+)
Gene ID: HRGMv2_1485_31_9
Type: TC
Location: 9121 - 9960 (+)
Gene ID: HRGMv2_1485_31_10
Type: TC
Location: 10029 - 11228 (+)
Gene ID: HRGMv2_1485_31_11
Type: CAZyme
Location: 11684 - 13951 (-)
Gene ID: HRGMv2_1485_31_12
Type: CAZyme
Location: 14079 - 15584 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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