dbCAN Logo

Cluster: HRGMv2_1484_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1484_7 HRGMv2_1484_7_11 10539 11927 + GH1
TF HRGMv2_1484_7 HRGMv2_1484_7_12 11948 12769 - HTH_6
pfam HRGMv2_1484_7 HRGMv2_1484_7_13 13058 13825 + YdjC
TC HRGMv2_1484_7 HRGMv2_1484_7_14 13980 15272 + 4.A.3.2.2
TC HRGMv2_1484_7 HRGMv2_1484_7_15 15321 15617 + 4.A.3.2.6
TC HRGMv2_1484_7 HRGMv2_1484_7_16 15620 15961 + 4.A.3.2.1
CAZyme HRGMv2_1484_7 HRGMv2_1484_7_17 16047 17534 + GH1
pfam HRGMv2_1484_7 HRGMv2_1484_7_18 17559 18467 + ROK
CAZyme HRGMv2_1484_7 HRGMv2_1484_7_19 18879 20309 + GH1
Gene ID: HRGMv2_1484_7_11
Type: CAZyme
Location: 10539 - 11927 (+)
Gene ID: HRGMv2_1484_7_12
Type: TF
Location: 11948 - 12769 (-)
Gene ID: HRGMv2_1484_7_13
Type: pfam
Location: 13058 - 13825 (+)
Gene ID: HRGMv2_1484_7_14
Type: TC
Location: 13980 - 15272 (+)
Gene ID: HRGMv2_1484_7_15
Type: TC
Location: 15321 - 15617 (+)
Gene ID: HRGMv2_1484_7_16
Type: TC
Location: 15620 - 15961 (+)
Gene ID: HRGMv2_1484_7_17
Type: CAZyme
Location: 16047 - 17534 (+)
Gene ID: HRGMv2_1484_7_18
Type: pfam
Location: 17559 - 18467 (+)
Gene ID: HRGMv2_1484_7_19
Type: CAZyme
Location: 18879 - 20309 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

← Back to Cluster List