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Cluster: HRGMv2_1483_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1483_3 HRGMv2_1483_3_31 34496 34939 + 4.A.6.1.16
pfam HRGMv2_1483_3 HRGMv2_1483_3_32 34939 35220 + YajC
TC HRGMv2_1483_3 HRGMv2_1483_3_33 35257 35739 + 4.A.6.1.4
TC HRGMv2_1483_3 HRGMv2_1483_3_34 35830 36630 + 4.A.6.1.4
TC HRGMv2_1483_3 HRGMv2_1483_3_35 36620 37702 + 4.A.6.1.4
TF HRGMv2_1483_3 HRGMv2_1483_3_36 37887 38618 + GntR
STP HRGMv2_1483_3 HRGMv2_1483_3_37 38733 39899 + SIS | SIS
CAZyme HRGMv2_1483_3 HRGMv2_1483_3_38 40017 41153 + CE9
Gene ID: HRGMv2_1483_3_31
Type: TC
Location: 34496 - 34939 (+)
Gene ID: HRGMv2_1483_3_32
Type: pfam
Location: 34939 - 35220 (+)
Gene ID: HRGMv2_1483_3_33
Type: TC
Location: 35257 - 35739 (+)
Gene ID: HRGMv2_1483_3_34
Type: TC
Location: 35830 - 36630 (+)
Gene ID: HRGMv2_1483_3_35
Type: TC
Location: 36620 - 37702 (+)
Gene ID: HRGMv2_1483_3_36
Type: TF
Location: 37887 - 38618 (+)
Gene ID: HRGMv2_1483_3_37
Type: STP
Location: 38733 - 39899 (+)
Gene ID: HRGMv2_1483_3_38
Type: CAZyme
Location: 40017 - 41153 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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