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Cluster: HRGMv2_1482_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1482_4 HRGMv2_1482_4_44 45887 46594 + 1.C.82.1.1
pfam HRGMv2_1482_4 HRGMv2_1482_4_45 46722 47432 - Metallophos | Metallophos_2
pfam HRGMv2_1482_4 HRGMv2_1482_4_46 47429 49345 - Bmp
TC HRGMv2_1482_4 HRGMv2_1482_4_47 49439 50206 - 1.A.23.4.10
pfam HRGMv2_1482_4 HRGMv2_1482_4_48 50335 52365 - Metallophos | 5_nucleotid_C
TC HRGMv2_1482_4 HRGMv2_1482_4_49 52438 53232 - 3.A.1.34.1
TC HRGMv2_1482_4 HRGMv2_1482_4_50 53225 54148 - 3.A.1.34.1
TC HRGMv2_1482_4 HRGMv2_1482_4_51 54353 55333 - 3.A.1.34.1
NULL(UNKNOWN) HRGMv2_1482_4 HRGMv2_1482_4_52 55493 56281 - NULL(UNKNOWN)
[View Structural Homologs]
pfam HRGMv2_1482_4 HRGMv2_1482_4_53 56531 57934 - tRNA-synt_2 | tRNA_anti-codon
TC HRGMv2_1482_4 HRGMv2_1482_4_54 58117 58680 - 4.A.1.2.6
peptidase HRGMv2_1482_4 HRGMv2_1482_4_55 58925 59827 + S09.UPW
TC HRGMv2_1482_4 HRGMv2_1482_4_56 60207 62564 + 9.A.8.1.6
pfam HRGMv2_1482_4 HRGMv2_1482_4_57 62660 63142 + tRNA_edit
TC HRGMv2_1482_4 HRGMv2_1482_4_58 63246 64442 + 2.A.1.2.18
CAZyme HRGMv2_1482_4 HRGMv2_1482_4_59 64662 66038 + GH13_20
Gene ID: HRGMv2_1482_4_44
Type: TC
Location: 45887 - 46594 (+)
Gene ID: HRGMv2_1482_4_45
Type: pfam
Location: 46722 - 47432 (-)
Gene ID: HRGMv2_1482_4_46
Type: pfam
Location: 47429 - 49345 (-)
Gene ID: HRGMv2_1482_4_47
Type: TC
Location: 49439 - 50206 (-)
Gene ID: HRGMv2_1482_4_48
Type: pfam
Location: 50335 - 52365 (-)
Gene ID: HRGMv2_1482_4_49
Type: TC
Location: 52438 - 53232 (-)
Gene ID: HRGMv2_1482_4_50
Type: TC
Location: 53225 - 54148 (-)
Gene ID: HRGMv2_1482_4_51
Type: TC
Location: 54353 - 55333 (-)
Gene ID: HRGMv2_1482_4_52
Type:
Location: 55493 - 56281 (-)
Gene ID: HRGMv2_1482_4_53
Type: pfam
Location: 56531 - 57934 (-)
Gene ID: HRGMv2_1482_4_54
Type: TC
Location: 58117 - 58680 (-)
Gene ID: HRGMv2_1482_4_55
Type: peptidase
Location: 58925 - 59827 (+)
Gene ID: HRGMv2_1482_4_56
Type: TC
Location: 60207 - 62564 (+)
Gene ID: HRGMv2_1482_4_57
Type: pfam
Location: 62660 - 63142 (+)
Gene ID: HRGMv2_1482_4_58
Type: TC
Location: 63246 - 64442 (+)
Gene ID: HRGMv2_1482_4_59
Type: CAZyme
Location: 64662 - 66038 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1482_4_48 vegan > omnivore 1.92977 0.00701
HRGMv2_1482_4_48 vegetarian > omnivore 1.42640 0.01057

🧭 Explore Read Mapping of CGC

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