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Cluster: HRGMv2_1482_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1482_2 HRGMv2_1482_2_57 65265 65708 + 4.A.6.1.16
pfam HRGMv2_1482_2 HRGMv2_1482_2_58 65708 65989 + YajC
TC HRGMv2_1482_2 HRGMv2_1482_2_59 66026 66508 + 4.A.6.1.4
TC HRGMv2_1482_2 HRGMv2_1482_2_60 66599 67399 + 4.A.6.1.4
TC HRGMv2_1482_2 HRGMv2_1482_2_61 67389 68471 + 4.A.6.1.4
TF HRGMv2_1482_2 HRGMv2_1482_2_62 68656 69387 + GntR
STP HRGMv2_1482_2 HRGMv2_1482_2_63 69502 70668 + SIS | SIS
CAZyme HRGMv2_1482_2 HRGMv2_1482_2_64 70786 71955 + CE9
Gene ID: HRGMv2_1482_2_57
Type: TC
Location: 65265 - 65708 (+)
Gene ID: HRGMv2_1482_2_58
Type: pfam
Location: 65708 - 65989 (+)
Gene ID: HRGMv2_1482_2_59
Type: TC
Location: 66026 - 66508 (+)
Gene ID: HRGMv2_1482_2_60
Type: TC
Location: 66599 - 67399 (+)
Gene ID: HRGMv2_1482_2_61
Type: TC
Location: 67389 - 68471 (+)
Gene ID: HRGMv2_1482_2_62
Type: TF
Location: 68656 - 69387 (+)
Gene ID: HRGMv2_1482_2_63
Type: STP
Location: 69502 - 70668 (+)
Gene ID: HRGMv2_1482_2_64
Type: CAZyme
Location: 70786 - 71955 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1482_2_58 vegan > omnivore 1.10394 0.00701

🧭 Explore Read Mapping of CGC

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