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Cluster: HRGMv2_1481_CGC8

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1481_5 HRGMv2_1481_5_41 45892 47061 - CE9
STP HRGMv2_1481_5 HRGMv2_1481_5_42 47179 48345 - SIS | SIS
TF HRGMv2_1481_5 HRGMv2_1481_5_43 48460 49191 - GntR
TC HRGMv2_1481_5 HRGMv2_1481_5_44 49375 50457 - 4.A.6.1.4
TC HRGMv2_1481_5 HRGMv2_1481_5_45 50447 51247 - 4.A.6.1.4
TC HRGMv2_1481_5 HRGMv2_1481_5_46 51338 51820 - 4.A.6.1.4
pfam HRGMv2_1481_5 HRGMv2_1481_5_47 51857 52138 - YajC
TC HRGMv2_1481_5 HRGMv2_1481_5_48 52138 52581 - 4.A.6.1.16
Gene ID: HRGMv2_1481_5_41
Type: CAZyme
Location: 45892 - 47061 (-)
Gene ID: HRGMv2_1481_5_42
Type: STP
Location: 47179 - 48345 (-)
Gene ID: HRGMv2_1481_5_43
Type: TF
Location: 48460 - 49191 (-)
Gene ID: HRGMv2_1481_5_44
Type: TC
Location: 49375 - 50457 (-)
Gene ID: HRGMv2_1481_5_45
Type: TC
Location: 50447 - 51247 (-)
Gene ID: HRGMv2_1481_5_46
Type: TC
Location: 51338 - 51820 (-)
Gene ID: HRGMv2_1481_5_47
Type: pfam
Location: 51857 - 52138 (-)
Gene ID: HRGMv2_1481_5_48
Type: TC
Location: 52138 - 52581 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1481_5_47 vegan > omnivore 1.03954 0.01047

🧭 Explore Read Mapping of CGC

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