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Cluster: HRGMv2_1481_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1481_2 HRGMv2_1481_2_85 109414 110838 + 4.A.1.2.3
NULL(UNKNOWN) HRGMv2_1481_2 HRGMv2_1481_2_86 110915 112132 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_1481_2 HRGMv2_1481_2_87 112141 113052 + 2.A.69.4.3
pfam HRGMv2_1481_2 HRGMv2_1481_2_88 113236 114747 - Sde182_NH-like
peptidase HRGMv2_1481_2 HRGMv2_1481_2_89 115011 116348 - S09.UPW
TC HRGMv2_1481_2 HRGMv2_1481_2_90 116839 118266 + 4.A.1.2.11
CAZyme HRGMv2_1481_2 HRGMv2_1481_2_91 118477 119790 + GH140
TF HRGMv2_1481_2 HRGMv2_1481_2_92 119960 121672 + GerE
TC HRGMv2_1481_2 HRGMv2_1481_2_93 121739 124507 - 3.A.3.4.1
STP HRGMv2_1481_2 HRGMv2_1481_2_94 124945 125625 + Pribosyltran
TF HRGMv2_1481_2 HRGMv2_1481_2_95 125961 126815 - HTH_6
CAZyme HRGMv2_1481_2 HRGMv2_1481_2_96 126858 129455 - GH106
TF HRGMv2_1481_2 HRGMv2_1481_2_97 129572 130579 + HTH_AraC
CAZyme HRGMv2_1481_2 HRGMv2_1481_2_98 130752 132200 + GH1
TC HRGMv2_1481_2 HRGMv2_1481_2_99 132469 133005 + 4.A.1.2.6
Gene ID: HRGMv2_1481_2_85
Type: TC
Location: 109414 - 110838 (+)
Gene ID: HRGMv2_1481_2_86
Type:
Location: 110915 - 112132 (+)
Gene ID: HRGMv2_1481_2_87
Type: TC
Location: 112141 - 113052 (+)
Gene ID: HRGMv2_1481_2_88
Type: pfam
Location: 113236 - 114747 (-)
Gene ID: HRGMv2_1481_2_89
Type: peptidase
Location: 115011 - 116348 (-)
Gene ID: HRGMv2_1481_2_90
Type: TC
Location: 116839 - 118266 (+)
Gene ID: HRGMv2_1481_2_91
Type: CAZyme
Location: 118477 - 119790 (+)
Gene ID: HRGMv2_1481_2_92
Type: TF
Location: 119960 - 121672 (+)
Gene ID: HRGMv2_1481_2_93
Type: TC
Location: 121739 - 124507 (-)
Gene ID: HRGMv2_1481_2_94
Type: STP
Location: 124945 - 125625 (+)
Gene ID: HRGMv2_1481_2_95
Type: TF
Location: 125961 - 126815 (-)
Gene ID: HRGMv2_1481_2_96
Type: CAZyme
Location: 126858 - 129455 (-)
Gene ID: HRGMv2_1481_2_97
Type: TF
Location: 129572 - 130579 (+)
Gene ID: HRGMv2_1481_2_98
Type: CAZyme
Location: 130752 - 132200 (+)
Gene ID: HRGMv2_1481_2_99
Type: TC
Location: 132469 - 133005 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1481_2_92 vegan > omnivore 1.01957 0.01047

🧭 Explore Read Mapping of CGC

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