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Cluster: HRGMv2_1481_CGC15

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1481_35 HRGMv2_1481_35_4 1676 2383 + 1.C.82.1.1
pfam HRGMv2_1481_35 HRGMv2_1481_35_5 2511 3221 - Metallophos | Metallophos_2
pfam HRGMv2_1481_35 HRGMv2_1481_35_6 3218 5134 - Bmp
TC HRGMv2_1481_35 HRGMv2_1481_35_7 5228 5995 - 1.A.23.4.10
pfam HRGMv2_1481_35 HRGMv2_1481_35_8 6123 8153 - Metallophos | 5_nucleotid_C
TC HRGMv2_1481_35 HRGMv2_1481_35_9 8226 9020 - 3.A.1.34.1
TC HRGMv2_1481_35 HRGMv2_1481_35_10 9013 9936 - 3.A.1.34.1
TC HRGMv2_1481_35 HRGMv2_1481_35_11 10141 11121 - 3.A.1.34.1
NULL(UNKNOWN) HRGMv2_1481_35 HRGMv2_1481_35_12 11282 12067 - NULL(UNKNOWN)
[View Structural Homologs]
pfam HRGMv2_1481_35 HRGMv2_1481_35_13 12317 13720 - tRNA-synt_2 | tRNA_anti-codon
TC HRGMv2_1481_35 HRGMv2_1481_35_14 13902 14465 - 4.A.1.2.6
peptidase HRGMv2_1481_35 HRGMv2_1481_35_15 14710 15612 + S09.UPW
TC HRGMv2_1481_35 HRGMv2_1481_35_16 15869 18229 + 9.A.8.1.6
TC HRGMv2_1481_35 HRGMv2_1481_35_17 18350 19546 + 2.A.1.2.18
CAZyme HRGMv2_1481_35 HRGMv2_1481_35_18 19700 21076 + GH13_20
Gene ID: HRGMv2_1481_35_4
Type: TC
Location: 1676 - 2383 (+)
Gene ID: HRGMv2_1481_35_5
Type: pfam
Location: 2511 - 3221 (-)
Gene ID: HRGMv2_1481_35_6
Type: pfam
Location: 3218 - 5134 (-)
Gene ID: HRGMv2_1481_35_7
Type: TC
Location: 5228 - 5995 (-)
Gene ID: HRGMv2_1481_35_8
Type: pfam
Location: 6123 - 8153 (-)
Gene ID: HRGMv2_1481_35_9
Type: TC
Location: 8226 - 9020 (-)
Gene ID: HRGMv2_1481_35_10
Type: TC
Location: 9013 - 9936 (-)
Gene ID: HRGMv2_1481_35_11
Type: TC
Location: 10141 - 11121 (-)
Gene ID: HRGMv2_1481_35_12
Type:
Location: 11282 - 12067 (-)
Gene ID: HRGMv2_1481_35_13
Type: pfam
Location: 12317 - 13720 (-)
Gene ID: HRGMv2_1481_35_14
Type: TC
Location: 13902 - 14465 (-)
Gene ID: HRGMv2_1481_35_15
Type: peptidase
Location: 14710 - 15612 (+)
Gene ID: HRGMv2_1481_35_16
Type: TC
Location: 15869 - 18229 (+)
Gene ID: HRGMv2_1481_35_17
Type: TC
Location: 18350 - 19546 (+)
Gene ID: HRGMv2_1481_35_18
Type: CAZyme
Location: 19700 - 21076 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1481_35_8 vegan > omnivore 1.83613 0.01047
HRGMv2_1481_35_8 vegetarian > omnivore 1.41947 0.02254

🧭 Explore Read Mapping of CGC

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