Cluster: HRGMv2_1480_CGC24
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1480
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1480_16 | HRGMv2_1480_16_15 | 17249 | 17737 | + | 4.A.6.1.9 |
| TC | HRGMv2_1480_16 | HRGMv2_1480_16_16 | 17810 | 18667 | + | 4.A.6.1.1 |
| TC | HRGMv2_1480_16 | HRGMv2_1480_16_17 | 18667 | 19494 | + | 4.A.6.1.6 |
| NULL(UNKNOWN) | HRGMv2_1480_16 | HRGMv2_1480_16_18 | 19690 | 20016 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TF | HRGMv2_1480_16 | HRGMv2_1480_16_19 | 20121 | 20561 | + | MarR |
| CAZyme | HRGMv2_1480_16 | HRGMv2_1480_16_20 | 21182 | 27595 | + | GH31_18 |
Gene ID: HRGMv2_1480_16_15
Type: TC
Location: 17249 - 17737 (+)
Type: TC
Location: 17249 - 17737 (+)
Gene ID: HRGMv2_1480_16_16
Type: TC
Location: 17810 - 18667 (+)
Type: TC
Location: 17810 - 18667 (+)
Gene ID: HRGMv2_1480_16_17
Type: TC
Location: 18667 - 19494 (+)
Type: TC
Location: 18667 - 19494 (+)
Gene ID: HRGMv2_1480_16_18
Type:
Location: 19690 - 20016 (+)
Type:
Location: 19690 - 20016 (+)
Gene ID: HRGMv2_1480_16_19
Type: TF
Location: 20121 - 20561 (+)
Type: TF
Location: 20121 - 20561 (+)
Gene ID: HRGMv2_1480_16_20
Type: CAZyme
Location: 21182 - 27595 (+)
Type: CAZyme
Location: 21182 - 27595 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp958453935
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_1480_16_20 | vegetarian > omnivore | 1.25898 | 0.03116 |
| HRGMv2_1480_16_20 | vegetarian > vegan | 2.16277 | 0.00455 |