Cluster: HRGMv2_1480_CGC20
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1480
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1480_10 | HRGMv2_1480_10_31 | 34575 | 36017 | + | 3.A.1.8.1 |
| TC | HRGMv2_1480_10 | HRGMv2_1480_10_32 | 36021 | 37091 | + | 3.A.1.1.3 |
| pfam | HRGMv2_1480_10 | HRGMv2_1480_10_33 | 37521 | 38804 | + | HGD-D |
| TC | HRGMv2_1480_10 | HRGMv2_1480_10_34 | 38989 | 40599 | + | 3.A.1.5.11 |
| TC | HRGMv2_1480_10 | HRGMv2_1480_10_35 | 40688 | 41641 | + | 3.A.1.5.39 |
| TC | HRGMv2_1480_10 | HRGMv2_1480_10_36 | 41638 | 42468 | + | 3.A.1.5.39 |
| TC | HRGMv2_1480_10 | HRGMv2_1480_10_37 | 42472 | 43467 | + | 3.A.1.5.37 |
| TC | HRGMv2_1480_10 | HRGMv2_1480_10_38 | 43457 | 44242 | + | 3.A.1.5.36 |
| pfam | HRGMv2_1480_10 | HRGMv2_1480_10_39 | 44319 | 45482 | + | HGD-D |
| pfam | HRGMv2_1480_10 | HRGMv2_1480_10_40 | 45533 | 46297 | + | BcrAD_BadFG |
| CAZyme | HRGMv2_1480_10 | HRGMv2_1480_10_41 | 46312 | 47529 | + | GT4 |
Gene ID: HRGMv2_1480_10_31
Type: TC
Location: 34575 - 36017 (+)
Type: TC
Location: 34575 - 36017 (+)
Gene ID: HRGMv2_1480_10_32
Type: TC
Location: 36021 - 37091 (+)
Type: TC
Location: 36021 - 37091 (+)
Gene ID: HRGMv2_1480_10_33
Type: pfam
Location: 37521 - 38804 (+)
Type: pfam
Location: 37521 - 38804 (+)
Gene ID: HRGMv2_1480_10_34
Type: TC
Location: 38989 - 40599 (+)
Type: TC
Location: 38989 - 40599 (+)
Gene ID: HRGMv2_1480_10_35
Type: TC
Location: 40688 - 41641 (+)
Type: TC
Location: 40688 - 41641 (+)
Gene ID: HRGMv2_1480_10_36
Type: TC
Location: 41638 - 42468 (+)
Type: TC
Location: 41638 - 42468 (+)
Gene ID: HRGMv2_1480_10_37
Type: TC
Location: 42472 - 43467 (+)
Type: TC
Location: 42472 - 43467 (+)
Gene ID: HRGMv2_1480_10_38
Type: TC
Location: 43457 - 44242 (+)
Type: TC
Location: 43457 - 44242 (+)
Gene ID: HRGMv2_1480_10_39
Type: pfam
Location: 44319 - 45482 (+)
Type: pfam
Location: 44319 - 45482 (+)
Gene ID: HRGMv2_1480_10_40
Type: pfam
Location: 45533 - 46297 (+)
Type: pfam
Location: 45533 - 46297 (+)
Gene ID: HRGMv2_1480_10_41
Type: CAZyme
Location: 46312 - 47529 (+)
Type: CAZyme
Location: 46312 - 47529 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp958453935
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_1480_10_34 | vegan > omnivore | 3.54184 | 0.01061 |
| HRGMv2_1480_10_35 | vegan > omnivore | 2.91050 | 0.01061 |
| HRGMv2_1480_10_35 | vegetarian > omnivore | 1.08914 | 0.03116 |
| HRGMv2_1480_10_36 | vegan > omnivore | 3.17342 | 0.01061 |
| HRGMv2_1480_10_36 | vegetarian > omnivore | 1.12335 | 0.03116 |
| HRGMv2_1480_10_37 | vegan > omnivore | 1.25319 | 0.01061 |
| HRGMv2_1480_10_38 | vegan > omnivore | 3.02378 | 0.01061 |
| HRGMv2_1480_10_41 | vegan > omnivore | 1.66667 | 0.01061 |