Cluster: HRGMv2_1480_CGC17
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 6
- Substrate:
- Genome ID: HRGMv2_1480
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_1480_7 | HRGMv2_1480_7_69 | 76108 | 77301 | + | GT111 |
| CAZyme | HRGMv2_1480_7 | HRGMv2_1480_7_70 | 77377 | 79776 | + | GT2 | GT2 |
| pfam | HRGMv2_1480_7 | HRGMv2_1480_7_71 | 79855 | 82038 | - | DUF7654 | DUF7657 |
| pfam | HRGMv2_1480_7 | HRGMv2_1480_7_72 | 82065 | 82421 | - | DUF2304 |
| CAZyme | HRGMv2_1480_7 | HRGMv2_1480_7_73 | 82421 | 83152 | - | GT2 |
| CAZyme | HRGMv2_1480_7 | HRGMv2_1480_7_74 | 83158 | 84399 | - | GT4 |
| pfam | HRGMv2_1480_7 | HRGMv2_1480_7_75 | 84399 | 85574 | - | Epimerase_2 |
| CAZyme | HRGMv2_1480_7 | HRGMv2_1480_7_76 | 85596 | 86660 | - | GT4 |
| pfam | HRGMv2_1480_7 | HRGMv2_1480_7_77 | 86720 | 87937 | - | Epimerase | Polysacc_synt_C |
| TC | HRGMv2_1480_7 | HRGMv2_1480_7_78 | 87939 | 88994 | - | 9.B.18.2.1 |
| NULL(UNKNOWN) | HRGMv2_1480_7 | HRGMv2_1480_7_79 | 89243 | 90307 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_1480_7 | HRGMv2_1480_7_80 | 90481 | 93591 | - | GH73 |
Gene ID: HRGMv2_1480_7_69
Type: CAZyme
Location: 76108 - 77301 (+)
Type: CAZyme
Location: 76108 - 77301 (+)
Gene ID: HRGMv2_1480_7_70
Type: CAZyme
Location: 77377 - 79776 (+)
Type: CAZyme
Location: 77377 - 79776 (+)
Gene ID: HRGMv2_1480_7_71
Type: pfam
Location: 79855 - 82038 (-)
Type: pfam
Location: 79855 - 82038 (-)
Gene ID: HRGMv2_1480_7_72
Type: pfam
Location: 82065 - 82421 (-)
Type: pfam
Location: 82065 - 82421 (-)
Gene ID: HRGMv2_1480_7_73
Type: CAZyme
Location: 82421 - 83152 (-)
Type: CAZyme
Location: 82421 - 83152 (-)
Gene ID: HRGMv2_1480_7_74
Type: CAZyme
Location: 83158 - 84399 (-)
Type: CAZyme
Location: 83158 - 84399 (-)
Gene ID: HRGMv2_1480_7_75
Type: pfam
Location: 84399 - 85574 (-)
Type: pfam
Location: 84399 - 85574 (-)
Gene ID: HRGMv2_1480_7_76
Type: CAZyme
Location: 85596 - 86660 (-)
Type: CAZyme
Location: 85596 - 86660 (-)
Gene ID: HRGMv2_1480_7_77
Type: pfam
Location: 86720 - 87937 (-)
Type: pfam
Location: 86720 - 87937 (-)
Gene ID: HRGMv2_1480_7_78
Type: TC
Location: 87939 - 88994 (-)
Type: TC
Location: 87939 - 88994 (-)
Gene ID: HRGMv2_1480_7_79
Type:
Location: 89243 - 90307 (-)
Type:
Location: 89243 - 90307 (-)
Gene ID: HRGMv2_1480_7_80
Type: CAZyme
Location: 90481 - 93591 (-)
Type: CAZyme
Location: 90481 - 93591 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp958453935
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_1480_7_69 | vegan > omnivore | 1.09146 | 0.01061 |
| HRGMv2_1480_7_69 | vegetarian > omnivore | 1.70439 | 0.03116 |
| HRGMv2_1480_7_70 | vegan > omnivore | 2.45583 | 0.01061 |
| HRGMv2_1480_7_70 | vegetarian > omnivore | 2.95801 | 0.03116 |
| HRGMv2_1480_7_72 | vegan > omnivore | 1.23719 | 0.01061 |
| HRGMv2_1480_7_72 | vegetarian > omnivore | 1.59536 | 0.03116 |
| HRGMv2_1480_7_73 | vegan > omnivore | 1.72262 | 0.01061 |
| HRGMv2_1480_7_73 | vegetarian > omnivore | 2.86402 | 0.03116 |
| HRGMv2_1480_7_77 | vegetarian > omnivore | 1.38471 | 0.03116 |
| HRGMv2_1480_7_79 | vegan > omnivore | 1.18589 | 0.01061 |
| HRGMv2_1480_7_79 | vegetarian > omnivore | 2.10686 | 0.03116 |
| HRGMv2_1480_7_80 | vegan > omnivore | 1.52199 | 0.01061 |
| HRGMv2_1480_7_80 | vegetarian > omnivore | 2.12881 | 0.03116 |