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Cluster: HRGMv2_1480_CGC16

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1480_7 HRGMv2_1480_7_57 61677 62663 - 9.B.97.6.3
TC HRGMv2_1480_7 HRGMv2_1480_7_58 62870 63637 - 3.A.1.103.1
TC HRGMv2_1480_7 HRGMv2_1480_7_59 63649 64494 - 3.A.1.103.6
pfam HRGMv2_1480_7 HRGMv2_1480_7_60 64584 66242 - DUF6020
CAZyme HRGMv2_1480_7 HRGMv2_1480_7_61 66511 67473 + GT81
CAZyme HRGMv2_1480_7 HRGMv2_1480_7_62 67480 68448 + GT2
TC HRGMv2_1480_7 HRGMv2_1480_7_63 68432 70843 + 9.B.144.1.5
Gene ID: HRGMv2_1480_7_57
Type: TC
Location: 61677 - 62663 (-)
Gene ID: HRGMv2_1480_7_58
Type: TC
Location: 62870 - 63637 (-)
Gene ID: HRGMv2_1480_7_59
Type: TC
Location: 63649 - 64494 (-)
Gene ID: HRGMv2_1480_7_60
Type: pfam
Location: 64584 - 66242 (-)
Gene ID: HRGMv2_1480_7_61
Type: CAZyme
Location: 66511 - 67473 (+)
Gene ID: HRGMv2_1480_7_62
Type: CAZyme
Location: 67480 - 68448 (+)
Gene ID: HRGMv2_1480_7_63
Type: TC
Location: 68432 - 70843 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1480_7_62 vegetarian > omnivore 1.04747 0.03116

🧭 Explore Read Mapping of CGC

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