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Cluster: HRGMv2_1478_CGC2

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1478_2 HRGMv2_1478_2_11 9927 10370 + 4.A.6.1.16
pfam HRGMv2_1478_2 HRGMv2_1478_2_12 10370 10651 + YajC
TC HRGMv2_1478_2 HRGMv2_1478_2_13 10688 11170 + 4.A.6.1.4
TC HRGMv2_1478_2 HRGMv2_1478_2_14 11261 12061 + 4.A.6.1.4
TC HRGMv2_1478_2 HRGMv2_1478_2_15 12051 13133 + 4.A.6.1.4
TF HRGMv2_1478_2 HRGMv2_1478_2_16 13318 14049 + GntR
STP HRGMv2_1478_2 HRGMv2_1478_2_17 14164 15330 + SIS | SIS
CAZyme HRGMv2_1478_2 HRGMv2_1478_2_18 15448 16617 + CE9
Gene ID: HRGMv2_1478_2_11
Type: TC
Location: 9927 - 10370 (+)
Gene ID: HRGMv2_1478_2_12
Type: pfam
Location: 10370 - 10651 (+)
Gene ID: HRGMv2_1478_2_13
Type: TC
Location: 10688 - 11170 (+)
Gene ID: HRGMv2_1478_2_14
Type: TC
Location: 11261 - 12061 (+)
Gene ID: HRGMv2_1478_2_15
Type: TC
Location: 12051 - 13133 (+)
Gene ID: HRGMv2_1478_2_16
Type: TF
Location: 13318 - 14049 (+)
Gene ID: HRGMv2_1478_2_17
Type: STP
Location: 14164 - 15330 (+)
Gene ID: HRGMv2_1478_2_18
Type: CAZyme
Location: 15448 - 16617 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1478_2_12 vegan > omnivore 1.02232 0.00701

🧭 Explore Read Mapping of CGC

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