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Cluster: HRGMv2_1478_CGC19

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1478_21 HRGMv2_1478_21_6 8092 9597 + GH77
CAZyme HRGMv2_1478_21 HRGMv2_1478_21_7 9726 11993 + GT35
TC HRGMv2_1478_21 HRGMv2_1478_21_8 12450 13649 - 3.A.1.1.22
TC HRGMv2_1478_21 HRGMv2_1478_21_9 13718 14557 - 3.A.1.1.45
TC HRGMv2_1478_21 HRGMv2_1478_21_10 14557 15411 - 3.A.1.1.45
TC HRGMv2_1478_21 HRGMv2_1478_21_11 15499 16815 - 3.A.1.1.45
TF HRGMv2_1478_21 HRGMv2_1478_21_12 17122 17841 - GntR
NULL(UNKNOWN) HRGMv2_1478_21 HRGMv2_1478_21_13 17925 18044 - NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_1478_21 HRGMv2_1478_21_14 18066 20516 + 4.A.1.1.8
Gene ID: HRGMv2_1478_21_6
Type: CAZyme
Location: 8092 - 9597 (+)
Gene ID: HRGMv2_1478_21_7
Type: CAZyme
Location: 9726 - 11993 (+)
Gene ID: HRGMv2_1478_21_8
Type: TC
Location: 12450 - 13649 (-)
Gene ID: HRGMv2_1478_21_9
Type: TC
Location: 13718 - 14557 (-)
Gene ID: HRGMv2_1478_21_10
Type: TC
Location: 14557 - 15411 (-)
Gene ID: HRGMv2_1478_21_11
Type: TC
Location: 15499 - 16815 (-)
Gene ID: HRGMv2_1478_21_12
Type: TF
Location: 17122 - 17841 (-)
Gene ID: HRGMv2_1478_21_13
Type:
Location: 17925 - 18044 (-)
Gene ID: HRGMv2_1478_21_14
Type: TC
Location: 18066 - 20516 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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