Cluster: HRGMv2_1478_CGC11
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1478
- CGC Family ID: CGCFAM_00182
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1478_6 | HRGMv2_1478_6_102 | 114758 | 116200 | + | 3.A.1.8.1 |
| TC | HRGMv2_1478_6 | HRGMv2_1478_6_103 | 116204 | 117274 | + | 3.A.1.10.2 |
| pfam | HRGMv2_1478_6 | HRGMv2_1478_6_104 | 117704 | 118987 | + | HGD-D |
| TC | HRGMv2_1478_6 | HRGMv2_1478_6_105 | 119172 | 120782 | + | 3.A.1.5.11 |
| TC | HRGMv2_1478_6 | HRGMv2_1478_6_106 | 120871 | 121824 | + | 3.A.1.5.39 |
| TC | HRGMv2_1478_6 | HRGMv2_1478_6_107 | 121821 | 122651 | + | 3.A.1.5.39 |
| TC | HRGMv2_1478_6 | HRGMv2_1478_6_108 | 122655 | 123650 | + | 3.A.1.5.37 |
| TC | HRGMv2_1478_6 | HRGMv2_1478_6_109 | 123640 | 124425 | + | 3.A.1.5.36 |
| pfam | HRGMv2_1478_6 | HRGMv2_1478_6_110 | 124502 | 125665 | + | HGD-D |
| pfam | HRGMv2_1478_6 | HRGMv2_1478_6_111 | 125716 | 126480 | + | BcrAD_BadFG |
| CAZyme | HRGMv2_1478_6 | HRGMv2_1478_6_112 | 126495 | 127712 | + | GT4 |
Gene ID: HRGMv2_1478_6_102
Type: TC
Location: 114758 - 116200 (+)
Type: TC
Location: 114758 - 116200 (+)
Gene ID: HRGMv2_1478_6_103
Type: TC
Location: 116204 - 117274 (+)
Type: TC
Location: 116204 - 117274 (+)
Gene ID: HRGMv2_1478_6_104
Type: pfam
Location: 117704 - 118987 (+)
Type: pfam
Location: 117704 - 118987 (+)
Gene ID: HRGMv2_1478_6_105
Type: TC
Location: 119172 - 120782 (+)
Type: TC
Location: 119172 - 120782 (+)
Gene ID: HRGMv2_1478_6_106
Type: TC
Location: 120871 - 121824 (+)
Type: TC
Location: 120871 - 121824 (+)
Gene ID: HRGMv2_1478_6_107
Type: TC
Location: 121821 - 122651 (+)
Type: TC
Location: 121821 - 122651 (+)
Gene ID: HRGMv2_1478_6_108
Type: TC
Location: 122655 - 123650 (+)
Type: TC
Location: 122655 - 123650 (+)
Gene ID: HRGMv2_1478_6_109
Type: TC
Location: 123640 - 124425 (+)
Type: TC
Location: 123640 - 124425 (+)
Gene ID: HRGMv2_1478_6_110
Type: pfam
Location: 124502 - 125665 (+)
Type: pfam
Location: 124502 - 125665 (+)
Gene ID: HRGMv2_1478_6_111
Type: pfam
Location: 125716 - 126480 (+)
Type: pfam
Location: 125716 - 126480 (+)
Gene ID: HRGMv2_1478_6_112
Type: CAZyme
Location: 126495 - 127712 (+)
Type: CAZyme
Location: 126495 - 127712 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_1478_6_105 | vegan > omnivore | 3.32079 | 0.00701 |
| HRGMv2_1478_6_106 | vegan > omnivore | 2.82296 | 0.00701 |
| HRGMv2_1478_6_106 | vegetarian > omnivore | 1.14147 | 0.03821 |
| HRGMv2_1478_6_107 | vegan > omnivore | 3.04434 | 0.00701 |
| HRGMv2_1478_6_107 | vegetarian > omnivore | 1.15953 | 0.03821 |
| HRGMv2_1478_6_109 | vegan > omnivore | 2.87985 | 0.00701 |
| HRGMv2_1478_6_112 | vegan > omnivore | 1.63094 | 0.00701 |