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Cluster: HRGMv2_1477_CGC8

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1477_27 HRGMv2_1477_27_3 2659 4164 + GH77
CAZyme HRGMv2_1477_27 HRGMv2_1477_27_4 4293 6560 + GT35
TC HRGMv2_1477_27 HRGMv2_1477_27_5 7017 8216 - 3.A.1.1.22
TC HRGMv2_1477_27 HRGMv2_1477_27_6 8285 9124 - 3.A.1.1.45
TC HRGMv2_1477_27 HRGMv2_1477_27_7 9124 9978 - 3.A.1.1.45
TC HRGMv2_1477_27 HRGMv2_1477_27_8 10066 11382 - 3.A.1.1.45
TF HRGMv2_1477_27 HRGMv2_1477_27_9 11689 12408 - GntR
NULL(UNKNOWN) HRGMv2_1477_27 HRGMv2_1477_27_10 12492 12611 - NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_1477_27 HRGMv2_1477_27_11 12633 15083 + 4.A.1.1.8
Gene ID: HRGMv2_1477_27_3
Type: CAZyme
Location: 2659 - 4164 (+)
Gene ID: HRGMv2_1477_27_4
Type: CAZyme
Location: 4293 - 6560 (+)
Gene ID: HRGMv2_1477_27_5
Type: TC
Location: 7017 - 8216 (-)
Gene ID: HRGMv2_1477_27_6
Type: TC
Location: 8285 - 9124 (-)
Gene ID: HRGMv2_1477_27_7
Type: TC
Location: 9124 - 9978 (-)
Gene ID: HRGMv2_1477_27_8
Type: TC
Location: 10066 - 11382 (-)
Gene ID: HRGMv2_1477_27_9
Type: TF
Location: 11689 - 12408 (-)
Gene ID: HRGMv2_1477_27_10
Type:
Location: 12492 - 12611 (-)
Gene ID: HRGMv2_1477_27_11
Type: TC
Location: 12633 - 15083 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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