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Cluster: HRGMv2_1477_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1477_18 HRGMv2_1477_18_5 3083 3421 - 4.A.3.1.2
TF HRGMv2_1477_18 HRGMv2_1477_18_6 3635 4639 - LacI
TC HRGMv2_1477_18 HRGMv2_1477_18_7 4997 6772 + 4.A.3.1.1
CAZyme HRGMv2_1477_18 HRGMv2_1477_18_8 6839 8278 + GH1
TF HRGMv2_1477_18 HRGMv2_1477_18_9 8545 9582 - LacI
CAZyme HRGMv2_1477_18 HRGMv2_1477_18_10 9924 11366 + GH1
TC HRGMv2_1477_18 HRGMv2_1477_18_11 11543 13303 + 4.A.3.1.1
TF HRGMv2_1477_18 HRGMv2_1477_18_12 13637 14647 - LacI
TC HRGMv2_1477_18 HRGMv2_1477_18_13 14924 16702 + 4.A.3.1.1
CAZyme HRGMv2_1477_18 HRGMv2_1477_18_14 16778 18199 + GH1
Gene ID: HRGMv2_1477_18_5
Type: TC
Location: 3083 - 3421 (-)
Gene ID: HRGMv2_1477_18_6
Type: TF
Location: 3635 - 4639 (-)
Gene ID: HRGMv2_1477_18_7
Type: TC
Location: 4997 - 6772 (+)
Gene ID: HRGMv2_1477_18_8
Type: CAZyme
Location: 6839 - 8278 (+)
Gene ID: HRGMv2_1477_18_9
Type: TF
Location: 8545 - 9582 (-)
Gene ID: HRGMv2_1477_18_10
Type: CAZyme
Location: 9924 - 11366 (+)
Gene ID: HRGMv2_1477_18_11
Type: TC
Location: 11543 - 13303 (+)
Gene ID: HRGMv2_1477_18_12
Type: TF
Location: 13637 - 14647 (-)
Gene ID: HRGMv2_1477_18_13
Type: TC
Location: 14924 - 16702 (+)
Gene ID: HRGMv2_1477_18_14
Type: CAZyme
Location: 16778 - 18199 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1477_18_9 vegetarian > omnivore 1.01767 0.03181

🧭 Explore Read Mapping of CGC

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