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Cluster: HRGMv2_1477_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1477_12 HRGMv2_1477_12_13 11988 12431 + 4.A.6.1.16
pfam HRGMv2_1477_12 HRGMv2_1477_12_14 12431 12712 + YajC
TC HRGMv2_1477_12 HRGMv2_1477_12_15 12749 13231 + 4.A.6.1.4
TC HRGMv2_1477_12 HRGMv2_1477_12_16 13322 14122 + 4.A.6.1.4
TC HRGMv2_1477_12 HRGMv2_1477_12_17 14112 15194 + 4.A.6.1.4
TF HRGMv2_1477_12 HRGMv2_1477_12_18 15379 16110 + GntR
STP HRGMv2_1477_12 HRGMv2_1477_12_19 16225 17391 + SIS | SIS
CAZyme HRGMv2_1477_12 HRGMv2_1477_12_20 17511 18680 + CE9
Gene ID: HRGMv2_1477_12_13
Type: TC
Location: 11988 - 12431 (+)
Gene ID: HRGMv2_1477_12_14
Type: pfam
Location: 12431 - 12712 (+)
Gene ID: HRGMv2_1477_12_15
Type: TC
Location: 12749 - 13231 (+)
Gene ID: HRGMv2_1477_12_16
Type: TC
Location: 13322 - 14122 (+)
Gene ID: HRGMv2_1477_12_17
Type: TC
Location: 14112 - 15194 (+)
Gene ID: HRGMv2_1477_12_18
Type: TF
Location: 15379 - 16110 (+)
Gene ID: HRGMv2_1477_12_19
Type: STP
Location: 16225 - 17391 (+)
Gene ID: HRGMv2_1477_12_20
Type: CAZyme
Location: 17511 - 18680 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1477_12_14 vegan > omnivore 1.11153 0.00863

🧭 Explore Read Mapping of CGC

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